Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL4A5P29400 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.63■□□□□ 0.41
COL4A5P29400 RN7SL530P-201ENST00000485097 298 ntBASIC17.63■□□□□ 0.41
COL4A5P29400 RPS23-204ENST00000507980 836 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC17.63■□□□□ 0.41
COL4A5P29400 HERC2P11-201ENST00000562845 725 ntBASIC17.63■□□□□ 0.41
COL4A5P29400 AC100756.2-201ENST00000569537 736 ntBASIC17.63■□□□□ 0.41
COL4A5P29400 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL4A5P29400 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
COL4A5P29400 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC17.62■□□□□ 0.41
COL4A5P29400 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 AREG-202ENST00000502307 956 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.62■□□□□ 0.41
COL4A5P29400 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.62■□□□□ 0.41
COL4A5P29400 AC124068.2-201ENST00000569473 1109 ntBASIC17.62■□□□□ 0.41
COL4A5P29400 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC17.62■□□□□ 0.41
COL4A5P29400 AP000322.3-201ENST00000608665 388 ntBASIC17.62■□□□□ 0.41
COL4A5P29400 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL4A5P29400 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.62■□□□□ 0.41
COL4A5P29400 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL4A5P29400 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL4A5P29400 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A5P29400 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A5P29400 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A5P29400 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 AP001527.2-201ENST00000614441 631 ntBASIC17.61■□□□□ 0.41
COL4A5P29400 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A5P29400 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
COL4A5P29400 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
COL4A5P29400 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 AL391005.1-201ENST00000623953 2435 ntBASIC17.61■□□□□ 0.41
COL4A5P29400 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A5P29400 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A5P29400 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A5P29400 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.61■□□□□ 0.41
COL4A5P29400 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A5P29400 LINC01101-201ENST00000622953 1884 ntBASIC17.61■□□□□ 0.41
COL4A5P29400 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL4A5P29400 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.61■□□□□ 0.41
COL4A5P29400 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL4A5P29400 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL4A5P29400 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC17.61■□□□□ 0.41
COL4A5P29400 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A5P29400 RPL18AP8-201ENST00000486071 528 ntBASIC17.61■□□□□ 0.41
COL4A5P29400 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC17.61■□□□□ 0.41
COL4A5P29400 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms