Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 AC079781.5-202ENST00000641784 3743 ntBASIC14.59□□□□□ -0.07
SEMA3DO95025 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.59□□□□□ -0.07
SEMA3DO95025 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 AC007292.2-201ENST00000593524 1812 ntBASIC14.59□□□□□ -0.07
SEMA3DO95025 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.59□□□□□ -0.07
SEMA3DO95025 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.59□□□□□ -0.07
SEMA3DO95025 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.59□□□□□ -0.07
SEMA3DO95025 PCDHA3-202ENST00000532566 4594 ntBASIC14.59□□□□□ -0.07
SEMA3DO95025 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SEMA3DO95025 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SEMA3DO95025 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.58□□□□□ -0.07
SEMA3DO95025 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
SEMA3DO95025 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SEMA3DO95025 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.58□□□□□ -0.08
SEMA3DO95025 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SEMA3DO95025 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.58□□□□□ -0.08
SEMA3DO95025 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.58□□□□□ -0.08
SEMA3DO95025 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.58□□□□□ -0.08
SEMA3DO95025 TSPY16P-201ENST00000449843 468 ntBASIC14.58□□□□□ -0.08
SEMA3DO95025 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.58□□□□□ -0.08
SEMA3DO95025 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.58□□□□□ -0.08
SEMA3DO95025 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.58□□□□□ -0.08
SEMA3DO95025 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SEMA3DO95025 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 AL137784.3-201ENST00000623858 2288 ntBASIC14.58□□□□□ -0.08
SEMA3DO95025 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 AL122018.1-201ENST00000446607 2310 ntBASIC14.58□□□□□ -0.08
SEMA3DO95025 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SEMA3DO95025 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SEMA3DO95025 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.57□□□□□ -0.08
SEMA3DO95025 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 AL158070.2-201ENST00000623713 1621 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 CICP23-201ENST00000605013 2741 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.57□□□□□ -0.08
SEMA3DO95025 BCRP1-201ENST00000444246 691 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.57□□□□□ -0.08
SEMA3DO95025 AC092552.1-201ENST00000547243 906 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 SPCS2P1-201ENST00000561636 679 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 AC124283.3-201ENST00000570869 594 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.57□□□□□ -0.08
SEMA3DO95025 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.57□□□□□ -0.08
SEMA3DO95025 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.57□□□□□ -0.08
SEMA3DO95025 AL132655.2-201ENST00000596276 594 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 AC004233.3-201ENST00000607794 1269 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 PRSS30P-206ENST00000641773 873 ntBASIC14.57□□□□□ -0.08
SEMA3DO95025 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SEMA3DO95025 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SEMA3DO95025 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms