Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 MIR645-201ENST00000385283 94 ntBASIC14.94□□□□□ -0.02
TTC28Q96AY4 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 EMP3-204ENST00000596315 761 ntTSL 2 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AC006372.4-201ENST00000624122 1543 ntBASIC14.94□□□□□ -0.02
TTC28Q96AY4 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.94□□□□□ -0.02
TTC28Q96AY4 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TTC28Q96AY4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 AL627095.1-201ENST00000414775 321 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 IFNL3P1-201ENST00000595082 501 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 RN7SL363P-201ENST00000482412 273 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 KRT8P1-201ENST00000557533 1207 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 AC027601.3-201ENST00000622907 509 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 AC010531.8-201ENST00000623341 685 ntBASIC14.93□□□□□ -0.02
TTC28Q96AY4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.93□□□□□ -0.02
TTC28Q96AY4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TTC28Q96AY4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TTC28Q96AY4 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
TTC28Q96AY4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TTC28Q96AY4 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC14.92□□□□□ -0.02
TTC28Q96AY4 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.92□□□□□ -0.02
TTC28Q96AY4 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
TTC28Q96AY4 AC106782.5-201ENST00000616011 337 ntBASIC14.92□□□□□ -0.02
TTC28Q96AY4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TTC28Q96AY4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TTC28Q96AY4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TTC28Q96AY4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms