Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 GRK6P1-201ENST00000400595 1711 ntBASIC17.27■□□□□ 0.36
ERCC4Q92889 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
ERCC4Q92889 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.27■□□□□ 0.36
ERCC4Q92889 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.27■□□□□ 0.36
ERCC4Q92889 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.27■□□□□ 0.36
ERCC4Q92889 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.27■□□□□ 0.36
ERCC4Q92889 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 SERBP1P3-201ENST00000459980 809 ntBASIC17.27■□□□□ 0.36
ERCC4Q92889 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.27■□□□□ 0.36
ERCC4Q92889 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.27■□□□□ 0.36
ERCC4Q92889 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ERCC4Q92889 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
ERCC4Q92889 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC4Q92889 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ERCC4Q92889 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
ERCC4Q92889 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ERCC4Q92889 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.27■□□□□ 0.35
ERCC4Q92889 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ERCC4Q92889 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.27■□□□□ 0.35
ERCC4Q92889 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
ERCC4Q92889 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ERCC4Q92889 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC17.27■□□□□ 0.35
ERCC4Q92889 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ERCC4Q92889 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 AC012508.2-201ENST00000567613 1472 ntBASIC17.26■□□□□ 0.35
ERCC4Q92889 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC17.26■□□□□ 0.35
ERCC4Q92889 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.26■□□□□ 0.35
ERCC4Q92889 HLA-J-203ENST00000494367 1087 ntBASIC17.26■□□□□ 0.35
ERCC4Q92889 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.26■□□□□ 0.35
ERCC4Q92889 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.26■□□□□ 0.35
ERCC4Q92889 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.26■□□□□ 0.35
ERCC4Q92889 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.26■□□□□ 0.35
ERCC4Q92889 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.26■□□□□ 0.35
ERCC4Q92889 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ERCC4Q92889 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.26■□□□□ 0.35
ERCC4Q92889 AL928921.2-201ENST00000641325 2442 ntBASIC17.26■□□□□ 0.35
ERCC4Q92889 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ERCC4Q92889 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
ERCC4Q92889 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.25■□□□□ 0.35
ERCC4Q92889 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.25■□□□□ 0.35
ERCC4Q92889 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ERCC4Q92889 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
ERCC4Q92889 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ERCC4Q92889 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.25■□□□□ 0.35
ERCC4Q92889 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.25■□□□□ 0.35
ERCC4Q92889 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.25■□□□□ 0.35
ERCC4Q92889 AP006288.1-201ENST00000446065 395 ntBASIC17.25■□□□□ 0.35
ERCC4Q92889 DNAJB3-202ENST00000449667 1266 ntBASIC17.25■□□□□ 0.35
ERCC4Q92889 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ERCC4Q92889 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.25■□□□□ 0.35
ERCC4Q92889 HLA-V-204ENST00000476601 1289 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms