Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CYP2A7P1-201ENST00000595391 815 ntBASIC9.39□□□□□ -0.91
LINC00643Q86TS7 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 NUTM2A-AS1-208ENST00000446751 2394 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TSPAN9-201ENST00000011898 4323 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PNPLA7-202ENST00000406427 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 COL4A6-209ENST00000545689 6380 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 CACNA1F-203ENST00000376265 6070 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 VAMP1-201ENST00000361716 3449 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 AC073335.2-201ENST00000610177 3441 ntBASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ZNF831-203ENST00000637017 10953 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 GAS7-219ENST00000585266 3535 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 BIVM-ERCC5-204ENST00000639132 5195 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 TLE3-208ENST00000557907 2295 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ARMC10P1-201ENST00000313754 855 ntBASIC9.38□□□□□ -0.91
LINC00643Q86TS7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 RAC2-202ENST00000401529 569 ntTSL 4 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 AL365330.1-201ENST00000607459 531 ntBASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 GRIN1-205ENST00000371555 4003 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 SH3RF2-206ENST00000511217 5607 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 GOLGA2P9-201ENST00000596977 1937 ntBASIC9.38□□□□□ -0.91
LINC00643Q86TS7 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 TCF21-202ENST00000367882 4551 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 FER1L5-207ENST00000641731 6294 ntAPPRIS ALT2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 SIGLEC16-201ENST00000599858 1437 ntBASIC9.38□□□□□ -0.91
LINC00643Q86TS7 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 POTEI-203ENST00000631234 2072 ntTSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 MAP1S-202ENST00000544059 3399 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 KDM6A-214ENST00000621147 2876 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LINC00643Q86TS7 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms