Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 AL451007.2-201ENST00000632004 563 ntBASIC12.28□□□□□ -0.44
VPS13CQ709C8 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 AC006548.2-201ENST00000605217 529 ntBASIC12.27□□□□□ -0.44
VPS13CQ709C8 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.27□□□□□ -0.44
VPS13CQ709C8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.27□□□□□ -0.44
VPS13CQ709C8 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
VPS13CQ709C8 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 ORAOV1P1-201ENST00000503108 395 ntBASIC12.27□□□□□ -0.45
VPS13CQ709C8 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 TREHP1-201ENST00000531328 465 ntBASIC12.27□□□□□ -0.45
VPS13CQ709C8 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 MRPL37P1-201ENST00000592451 1337 ntBASIC12.27□□□□□ -0.45
VPS13CQ709C8 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 HLA-DMA-203ENST00000395305 777 ntBASIC12.27□□□□□ -0.45
VPS13CQ709C8 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 AC012441.2-201ENST00000444843 739 ntBASIC12.27□□□□□ -0.45
VPS13CQ709C8 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
VPS13CQ709C8 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.27□□□□□ -0.45
VPS13CQ709C8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 C18orf15-201ENST00000623680 2534 ntBASIC12.26□□□□□ -0.45
VPS13CQ709C8 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 FTLP5-201ENST00000586853 534 ntBASIC12.26□□□□□ -0.45
VPS13CQ709C8 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 SSR4P1-203ENST00000599569 2260 ntBASIC12.26□□□□□ -0.45
VPS13CQ709C8 API5-208ENST00000531273 1868 ntTSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 AL109809.1-201ENST00000418979 1367 ntBASIC12.26□□□□□ -0.45
VPS13CQ709C8 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
VPS13CQ709C8 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.26□□□□□ -0.45
VPS13CQ709C8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms