Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AC148477.9-201ENST00000623974 539 ntBASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AC011491.1-203ENST00000637688 543 ntBASIC14.64□□□□□ -0.07
COL28A1Q2UY09 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AC074338.1-201ENST00000416825 156 ntBASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AC007274.2-201ENST00000421675 662 ntBASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AL590640.2-201ENST00000457038 527 ntBASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 RN7SL574P-201ENST00000581512 297 ntBASIC14.63□□□□□ -0.07
COL28A1Q2UY09 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL28A1Q2UY09 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AC011477.6-201ENST00000604980 1927 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 MIR600HG-201ENST00000449175 5984 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms