Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC16.5■□□□□ 0.23
HTTP42858 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HTTP42858 AL603832.2-201ENST00000566195 2125 ntBASIC16.49■□□□□ 0.23
HTTP42858 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HTTP42858 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 AC023906.1-201ENST00000486386 453 ntBASIC16.49■□□□□ 0.23
HTTP42858 AC131206.1-201ENST00000538078 1211 ntBASIC16.49■□□□□ 0.23
HTTP42858 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.49■□□□□ 0.23
HTTP42858 HERC2P11-201ENST00000562845 725 ntBASIC16.49■□□□□ 0.23
HTTP42858 AC100756.2-201ENST00000569537 736 ntBASIC16.49■□□□□ 0.23
HTTP42858 NAV1-210ENST00000593583 726 ntBASIC16.49■□□□□ 0.23
HTTP42858 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 NQO2-204ENST00000380454 851 ntTSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.49■□□□□ 0.23
HTTP42858 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.49■□□□□ 0.23
HTTP42858 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
HTTP42858 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.49■□□□□ 0.23
HTTP42858 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HTTP42858 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.48■□□□□ 0.23
HTTP42858 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.48■□□□□ 0.23
HTTP42858 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 MIR1301-201ENST00000408518 82 ntBASIC16.48■□□□□ 0.23
HTTP42858 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 CICP12-201ENST00000455801 843 ntBASIC16.48■□□□□ 0.23
HTTP42858 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC16.48■□□□□ 0.23
HTTP42858 AC226150.1-201ENST00000544259 466 ntBASIC16.48■□□□□ 0.23
HTTP42858 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC16.48■□□□□ 0.23
HTTP42858 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.48■□□□□ 0.23
HTTP42858 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 RGS5-216ENST00000449680 788 ntTSL 3 BASIC16.48■□□□□ 0.23
HTTP42858 AC013553.1-201ENST00000560906 267 ntBASIC16.48■□□□□ 0.23
HTTP42858 AP000322.3-201ENST00000608665 388 ntBASIC16.48■□□□□ 0.23
HTTP42858 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.48■□□□□ 0.23
HTTP42858 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HTTP42858 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 TLE1P1-201ENST00000422965 589 ntBASIC16.48■□□□□ 0.23
HTTP42858 NME6-208ENST00000435684 599 ntTSL 2 BASIC16.48■□□□□ 0.23
HTTP42858 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC16.48■□□□□ 0.23
HTTP42858 AC092612.1-201ENST00000514501 998 ntBASIC16.48■□□□□ 0.23
HTTP42858 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC16.48■□□□□ 0.23
HTTP42858 AC027601.3-201ENST00000622907 509 ntBASIC16.48■□□□□ 0.23
HTTP42858 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC16.48■□□□□ 0.23
HTTP42858 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HTTP42858 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HTTP42858 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HTTP42858 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
HTTP42858 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HTTP42858 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HTTP42858 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC16.47■□□□□ 0.23
HTTP42858 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HTTP42858 CELP-201ENST00000411440 1249 ntTSL 5 BASIC16.47■□□□□ 0.23
HTTP42858 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC16.47■□□□□ 0.23
HTTP42858 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms