Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.35□□□□□ -0.11
SOX3P41225 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.35□□□□□ -0.11
SOX3P41225 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.35□□□□□ -0.11
SOX3P41225 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.35□□□□□ -0.11
SOX3P41225 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.35□□□□□ -0.11
SOX3P41225 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.35□□□□□ -0.11
SOX3P41225 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 FGD5P1-202ENST00000614866 2498 ntBASIC14.35□□□□□ -0.11
SOX3P41225 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SOX3P41225 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
SOX3P41225 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.34□□□□□ -0.11
SOX3P41225 AC127383.1-201ENST00000444697 1800 ntBASIC14.34□□□□□ -0.11
SOX3P41225 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 KRT8P22-201ENST00000562317 1415 ntBASIC14.34□□□□□ -0.11
SOX3P41225 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.34□□□□□ -0.11
SOX3P41225 AC005840.4-201ENST00000541242 2494 ntBASIC14.34□□□□□ -0.11
SOX3P41225 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.34□□□□□ -0.11
SOX3P41225 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.34□□□□□ -0.11
SOX3P41225 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 TTTY23B-201ENST00000442790 549 ntBASIC14.34□□□□□ -0.11
SOX3P41225 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.34□□□□□ -0.11
SOX3P41225 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.34□□□□□ -0.11
SOX3P41225 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 AC120045.2-201ENST00000567334 178 ntBASIC14.34□□□□□ -0.11
SOX3P41225 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
SOX3P41225 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 CU634019.7-201ENST00000624153 1185 ntBASIC14.34□□□□□ -0.11
SOX3P41225 FP236241.2-201ENST00000624906 1185 ntBASIC14.34□□□□□ -0.11
SOX3P41225 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.34□□□□□ -0.11
SOX3P41225 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.34□□□□□ -0.11
SOX3P41225 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SOX3P41225 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.34□□□□□ -0.11
SOX3P41225 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SOX3P41225 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.33□□□□□ -0.11
SOX3P41225 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
SOX3P41225 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.33□□□□□ -0.11
SOX3P41225 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SOX3P41225 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SOX3P41225 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.33□□□□□ -0.12
SOX3P41225 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SOX3P41225 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
SOX3P41225 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SOX3P41225 C1QBPP1-201ENST00000400117 770 ntBASIC14.33□□□□□ -0.12
SOX3P41225 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.33□□□□□ -0.12
SOX3P41225 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms