Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTPN4P29074 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 GK-202ENST00000378941 458 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN4P29074 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTPN4P29074 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 AL080243.2-201ENST00000418783 582 ntBASIC15.32■□□□□ 0.04
PTPN4P29074 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 NME2P1-201ENST00000426182 414 ntBASIC15.32■□□□□ 0.04
PTPN4P29074 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN4P29074 RN7SL692P-201ENST00000464677 288 ntBASIC15.32■□□□□ 0.04
PTPN4P29074 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN4P29074 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.32■□□□□ 0.04
PTPN4P29074 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 ACE3P-201ENST00000423435 1973 ntBASIC15.32■□□□□ 0.04
PTPN4P29074 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTPN4P29074 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTPN4P29074 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN4P29074 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 AL589702.1-201ENST00000641229 1509 ntBASIC15.32■□□□□ 0.04
PTPN4P29074 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.32■□□□□ 0.04
PTPN4P29074 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN4P29074 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN4P29074 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN4P29074 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN4P29074 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN4P29074 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN4P29074 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN4P29074 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.31■□□□□ 0.04
PTPN4P29074 AC026979.3-201ENST00000607315 403 ntBASIC15.31■□□□□ 0.04
PTPN4P29074 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN4P29074 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.31■□□□□ 0.04
PTPN4P29074 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 CICP20-201ENST00000443330 2801 ntBASIC15.31■□□□□ 0.04
PTPN4P29074 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.31■□□□□ 0.04
PTPN4P29074 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTPN4P29074 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTPN4P29074 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms