Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.94□□□□□ -0.18
MSX1P28360 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.94□□□□□ -0.18
MSX1P28360 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 AC006058.4-201ENST00000624016 1670 ntBASIC13.94□□□□□ -0.18
MSX1P28360 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
MSX1P28360 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 AC097376.2-205ENST00000610159 5334 ntBASIC13.94□□□□□ -0.18
MSX1P28360 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MSX1P28360 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
MSX1P28360 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
MSX1P28360 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.93□□□□□ -0.18
MSX1P28360 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MSX1P28360 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.93□□□□□ -0.18
MSX1P28360 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 AL139094.1-201ENST00000405549 1188 ntBASIC13.93□□□□□ -0.18
MSX1P28360 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.93□□□□□ -0.18
MSX1P28360 AL355994.2-201ENST00000447882 704 ntBASIC13.93□□□□□ -0.18
MSX1P28360 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 PTP4A1P2-201ENST00000546033 454 ntBASIC13.93□□□□□ -0.18
MSX1P28360 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.93□□□□□ -0.18
MSX1P28360 CLUHP6-201ENST00000580789 941 ntBASIC13.93□□□□□ -0.18
MSX1P28360 RN7SL219P-201ENST00000582872 296 ntBASIC13.93□□□□□ -0.18
MSX1P28360 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 AC005252.2-201ENST00000624630 1141 ntBASIC13.93□□□□□ -0.18
MSX1P28360 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.93□□□□□ -0.18
MSX1P28360 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
MSX1P28360 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX1P28360 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MSX1P28360 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 TUBB1P2-201ENST00000422712 1306 ntBASIC13.92□□□□□ -0.18
MSX1P28360 TUBB1P1-201ENST00000503144 1300 ntBASIC13.92□□□□□ -0.18
MSX1P28360 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
MSX1P28360 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX1P28360 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
MSX1P28360 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
MSX1P28360 ZBED1P1-201ENST00000502364 1930 ntBASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms