Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VCANP13611 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.26■□□□□ 0.03
VCANP13611 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.26■□□□□ 0.03
VCANP13611 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC15.26■□□□□ 0.03
VCANP13611 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.26■□□□□ 0.03
VCANP13611 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.26■□□□□ 0.03
VCANP13611 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.26■□□□□ 0.03
VCANP13611 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC15.25■□□□□ 0.03
VCANP13611 HERC2P11-201ENST00000562845 725 ntBASIC15.25■□□□□ 0.03
VCANP13611 AC100756.2-201ENST00000569537 736 ntBASIC15.25■□□□□ 0.03
VCANP13611 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VCANP13611 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.25■□□□□ 0.03
VCANP13611 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 RN7SL69P-201ENST00000468423 272 ntBASIC15.25■□□□□ 0.03
VCANP13611 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
VCANP13611 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC15.25■□□□□ 0.03
VCANP13611 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.25■□□□□ 0.03
VCANP13611 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VCANP13611 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
VCANP13611 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.25■□□□□ 0.03
VCANP13611 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VCANP13611 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
VCANP13611 POLR2LP1-206ENST00000444785 187 ntBASIC15.25■□□□□ 0.03
VCANP13611 URB1-AS1-201ENST00000534991 831 ntBASIC15.25■□□□□ 0.03
VCANP13611 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC15.25■□□□□ 0.03
VCANP13611 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.25■□□□□ 0.03
VCANP13611 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.25■□□□□ 0.03
VCANP13611 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VCANP13611 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
VCANP13611 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.25■□□□□ 0.03
VCANP13611 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.24■□□□□ 0.03
VCANP13611 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC15.24■□□□□ 0.03
VCANP13611 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 AC079331.1-201ENST00000623200 1200 ntBASIC15.24■□□□□ 0.03
VCANP13611 AL603764.1-201ENST00000636452 321 ntBASIC15.24■□□□□ 0.03
VCANP13611 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 RN7SL578P-201ENST00000477781 283 ntBASIC15.24■□□□□ 0.03
VCANP13611 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC15.24■□□□□ 0.03
VCANP13611 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.24■□□□□ 0.03
VCANP13611 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 AC011477.6-201ENST00000604980 1927 ntBASIC15.24■□□□□ 0.03
VCANP13611 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.24■□□□□ 0.03
VCANP13611 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC15.24■□□□□ 0.03
VCANP13611 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VCANP13611 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.24■□□□□ 0.03
VCANP13611 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VCANP13611 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC15.23■□□□□ 0.03
VCANP13611 CAP2-207ENST00000493172 861 ntTSL 2 BASIC15.23■□□□□ 0.03
VCANP13611 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms