Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.86□□□□□ -0.03
SIX3O95343 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 MRPS18AP1-201ENST00000414458 589 ntBASIC14.86□□□□□ -0.03
SIX3O95343 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.86□□□□□ -0.03
SIX3O95343 HLA-K-203ENST00000430151 1046 ntBASIC14.86□□□□□ -0.03
SIX3O95343 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 AC023310.3-201ENST00000557027 670 ntBASIC14.86□□□□□ -0.03
SIX3O95343 AC100756.1-201ENST00000562736 682 ntBASIC14.86□□□□□ -0.03
SIX3O95343 AC138749.3-201ENST00000567691 622 ntBASIC14.86□□□□□ -0.03
SIX3O95343 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.86□□□□□ -0.03
SIX3O95343 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.86□□□□□ -0.03
SIX3O95343 AC116165.1-201ENST00000611806 668 ntBASIC14.86□□□□□ -0.03
SIX3O95343 AC106028.4-201ENST00000614509 607 ntBASIC14.86□□□□□ -0.03
SIX3O95343 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.86□□□□□ -0.03
SIX3O95343 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
SIX3O95343 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.86□□□□□ -0.03
SIX3O95343 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SIX3O95343 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.86□□□□□ -0.03
SIX3O95343 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 AC093525.8-201ENST00000624099 1342 ntBASIC14.86□□□□□ -0.03
SIX3O95343 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
SIX3O95343 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.85□□□□□ -0.03
SIX3O95343 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.85□□□□□ -0.03
SIX3O95343 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.85□□□□□ -0.03
SIX3O95343 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.85□□□□□ -0.03
SIX3O95343 RARRES2P5-201ENST00000564013 466 ntBASIC14.85□□□□□ -0.03
SIX3O95343 AC036164.1-201ENST00000570544 333 ntBASIC14.85□□□□□ -0.03
SIX3O95343 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.85□□□□□ -0.03
SIX3O95343 AL049840.4-201ENST00000602422 811 ntBASIC14.85□□□□□ -0.03
SIX3O95343 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.85□□□□□ -0.03
SIX3O95343 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.85□□□□□ -0.03
SIX3O95343 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.85□□□□□ -0.03
SIX3O95343 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
SIX3O95343 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SIX3O95343 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 AC023090.2-201ENST00000625182 2110 ntBASIC14.84□□□□□ -0.03
SIX3O95343 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.84□□□□□ -0.03
SIX3O95343 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.84□□□□□ -0.03
SIX3O95343 AL138799.1-201ENST00000448213 1675 ntBASIC14.84□□□□□ -0.03
SIX3O95343 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SIX3O95343 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms