Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS4BO75351 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS4BO75351 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS4BO75351 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 RN7SL828P-201ENST00000607615 303 ntBASIC14.95□□□□□ -0.02
VPS4BO75351 AL133215.2-201ENST00000609242 977 ntBASIC14.95□□□□□ -0.02
VPS4BO75351 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.95□□□□□ -0.02
VPS4BO75351 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS4BO75351 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS4BO75351 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
VPS4BO75351 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 AC104457.1-201ENST00000401024 814 ntBASIC14.94□□□□□ -0.02
VPS4BO75351 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS4BO75351 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS4BO75351 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS4BO75351 MIR6069-201ENST00000620069 79 ntBASIC14.94□□□□□ -0.02
VPS4BO75351 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS4BO75351 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS4BO75351 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
VPS4BO75351 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 BTBD7P1-201ENST00000447253 1453 ntBASIC14.94□□□□□ -0.02
VPS4BO75351 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS4BO75351 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
VPS4BO75351 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS4BO75351 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS4BO75351 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
VPS4BO75351 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
VPS4BO75351 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
VPS4BO75351 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4BO75351 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS4BO75351 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS4BO75351 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
VPS4BO75351 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS4BO75351 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
VPS4BO75351 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
VPS4BO75351 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms