Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC20.7■□□□□ 0.9
NPHP4O75161 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
NPHP4O75161 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP4O75161 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC20.7■□□□□ 0.9
NPHP4O75161 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP4O75161 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NPHP4O75161 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC20.7■□□□□ 0.9
NPHP4O75161 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP4O75161 ELP5-212ENST00000574255 671 ntTSL 2 BASIC20.7■□□□□ 0.9
NPHP4O75161 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
NPHP4O75161 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
NPHP4O75161 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC20.69■□□□□ 0.9
NPHP4O75161 AL109809.1-201ENST00000418979 1367 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC20.69■□□□□ 0.9
NPHP4O75161 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 R3HDM2P2-201ENST00000401880 2116 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
NPHP4O75161 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
NPHP4O75161 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP4O75161 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 RNVU1-8-201ENST00000364272 125 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP4O75161 OR8T1P-201ENST00000421347 918 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 AC092580.1-201ENST00000433998 658 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 RPL3P5-201ENST00000441645 1232 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP4O75161 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP4O75161 EMC4-208ENST00000559078 599 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP4O75161 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP4O75161 AC018846.1-201ENST00000568231 183 ntBASIC20.69■□□□□ 0.9
NPHP4O75161 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NPHP4O75161 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP4O75161 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP4O75161 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP4O75161 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP4O75161 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP4O75161 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 AL513523.2-202ENST00000427283 2040 ntBASIC20.68■□□□□ 0.9
NPHP4O75161 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP4O75161 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
NPHP4O75161 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
NPHP4O75161 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC20.68■□□□□ 0.9
NPHP4O75161 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC20.68■□□□□ 0.9
NPHP4O75161 ALG1L3P-201ENST00000503331 765 ntBASIC20.68■□□□□ 0.9
NPHP4O75161 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC20.68■□□□□ 0.9
NPHP4O75161 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP4O75161 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP4O75161 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC20.68■□□□□ 0.9
NPHP4O75161 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC20.68■□□□□ 0.9
NPHP4O75161 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP4O75161 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP4O75161 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP4O75161 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP4O75161 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP4O75161 AP002353.1-201ENST00000528257 1599 ntBASIC20.67■□□□□ 0.9
NPHP4O75161 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP4O75161 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP4O75161 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP4O75161 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms