Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC12.93□□□□□ -0.34
COL12A1Q99715 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.93□□□□□ -0.34
COL12A1Q99715 ACTG1P19-201ENST00000418987 1116 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 PPIA-210ENST00000620047 827 ntTSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 PPIA-208ENST00000489459 907 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.93□□□□□ -0.34
COL12A1Q99715 FOXN3-AS2-201ENST00000554071 1262 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 AL512324.3-201ENST00000619383 882 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 MIR6746-201ENST00000620971 63 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC12.93□□□□□ -0.34
COL12A1Q99715 AC006058.4-201ENST00000624016 1670 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
COL12A1Q99715 AC008894.3-201ENST00000624324 3103 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL12A1Q99715 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 AC132872.4-202ENST00000622924 2756 ntBASIC12.93□□□□□ -0.34
COL12A1Q99715 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC12.93□□□□□ -0.34
COL12A1Q99715 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 DKKL1P1-201ENST00000400550 698 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.92□□□□□ -0.34
COL12A1Q99715 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 HERC2P11-201ENST00000562845 725 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 AC100756.2-201ENST00000569537 736 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 PHF23-213ENST00000613632 850 ntTSL 5 BASIC12.92□□□□□ -0.34
COL12A1Q99715 HELLS-212ENST00000630929 400 ntTSL 5 BASIC12.92□□□□□ -0.34
COL12A1Q99715 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC12.92□□□□□ -0.34
COL12A1Q99715 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC007326.1-201ENST00000604539 458 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 AC010976.2-201ENST00000609697 852 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 AL450487.2-201ENST00000615934 407 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC084018.2-201ENST00000613093 2607 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 AC124067.4-201ENST00000519691 2379 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC099398.1-201ENST00000567919 2776 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.92□□□□□ -0.34
COL12A1Q99715 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms