Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 IL9RP3-201ENST00000442856 1674 ntBASIC16.34■□□□□ 0.21
LRCH3Q96II8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AC239868.1-201ENST00000369385 493 ntBASIC16.34■□□□□ 0.21
LRCH3Q96II8 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AC026320.2-201ENST00000434379 478 ntBASIC16.34■□□□□ 0.21
LRCH3Q96II8 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AC084752.1-201ENST00000509766 622 ntBASIC16.34■□□□□ 0.21
LRCH3Q96II8 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 AC002472.4-201ENST00000641915 272 ntBASIC16.34■□□□□ 0.21
LRCH3Q96II8 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRCH3Q96II8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LRCH3Q96II8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRCH3Q96II8 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRCH3Q96II8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRCH3Q96II8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LRCH3Q96II8 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRCH3Q96II8 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LRCH3Q96II8 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
LRCH3Q96II8 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 AC004554.1-201ENST00000422830 1468 ntBASIC16.33■□□□□ 0.2
LRCH3Q96II8 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRCH3Q96II8 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LRCH3Q96II8 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.32■□□□□ 0.2
LRCH3Q96II8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRCH3Q96II8 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms