Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 AC018442.1-201ENST00000421439 2061 ntBASIC17.3■□□□□ 0.36
ERCC4Q92889 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ERCC4Q92889 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ERCC4Q92889 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.29■□□□□ 0.36
ERCC4Q92889 AL133267.1-201ENST00000398220 340 ntBASIC17.29■□□□□ 0.36
ERCC4Q92889 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.29■□□□□ 0.36
ERCC4Q92889 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 AL512356.2-201ENST00000546955 174 ntBASIC17.29■□□□□ 0.36
ERCC4Q92889 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.29■□□□□ 0.36
ERCC4Q92889 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.29■□□□□ 0.36
ERCC4Q92889 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.29■□□□□ 0.36
ERCC4Q92889 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 AC126335.2-201ENST00000623362 4637 ntBASIC17.29■□□□□ 0.36
ERCC4Q92889 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ERCC4Q92889 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC4Q92889 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC4Q92889 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 AC113367.3-201ENST00000508316 1912 ntBASIC17.28■□□□□ 0.36
ERCC4Q92889 AC254562.1-201ENST00000417586 456 ntBASIC17.28■□□□□ 0.36
ERCC4Q92889 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 AC044860.1-202ENST00000559481 777 ntBASIC17.28■□□□□ 0.36
ERCC4Q92889 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
ERCC4Q92889 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
ERCC4Q92889 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC4Q92889 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC4Q92889 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms