Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
NEK3P51956 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.71■□□□□ 0.11
NEK3P51956 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.71■□□□□ 0.1
NEK3P51956 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
NEK3P51956 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
NEK3P51956 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
NEK3P51956 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
NEK3P51956 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 AC140479.7-201ENST00000636301 2332 ntBASIC15.7■□□□□ 0.1
NEK3P51956 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
NEK3P51956 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
NEK3P51956 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
NEK3P51956 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 VDAC1P7-201ENST00000462417 847 ntBASIC15.7■□□□□ 0.1
NEK3P51956 AC015936.2-201ENST00000593177 259 ntBASIC15.7■□□□□ 0.1
NEK3P51956 AC010319.3-201ENST00000597028 470 ntBASIC15.7■□□□□ 0.1
NEK3P51956 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.7■□□□□ 0.1
NEK3P51956 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.7■□□□□ 0.1
NEK3P51956 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.7■□□□□ 0.1
NEK3P51956 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.7■□□□□ 0.1
NEK3P51956 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
NEK3P51956 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NEK3P51956 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 AC007686.3-201ENST00000619017 3487 ntBASIC15.69■□□□□ 0.1
NEK3P51956 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.69■□□□□ 0.1
NEK3P51956 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 C1QBPP1-201ENST00000400117 770 ntBASIC15.69■□□□□ 0.1
NEK3P51956 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.69■□□□□ 0.1
NEK3P51956 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.69■□□□□ 0.1
NEK3P51956 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.69■□□□□ 0.1
NEK3P51956 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.69■□□□□ 0.1
NEK3P51956 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 AC120045.2-201ENST00000567334 178 ntBASIC15.69■□□□□ 0.1
NEK3P51956 AC124283.3-201ENST00000570869 594 ntBASIC15.69■□□□□ 0.1
NEK3P51956 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 AL162274.1-201ENST00000617191 1098 ntBASIC15.69■□□□□ 0.1
NEK3P51956 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.69■□□□□ 0.1
NEK3P51956 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms