Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CDKL5O76039 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.67■□□□□ 0.42
CDKL5O76039 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDKL5O76039 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDKL5O76039 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDKL5O76039 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.67■□□□□ 0.42
CDKL5O76039 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDKL5O76039 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.67■□□□□ 0.42
CDKL5O76039 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDKL5O76039 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CDKL5O76039 AC106881.1-201ENST00000605849 3329 ntBASIC17.67■□□□□ 0.42
CDKL5O76039 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.67■□□□□ 0.42
CDKL5O76039 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDKL5O76039 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CDKL5O76039 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CDKL5O76039 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.66■□□□□ 0.42
CDKL5O76039 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 ACKR1-201ENST00000368121 1240 ntBASIC17.66■□□□□ 0.42
CDKL5O76039 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 KLF2P2-201ENST00000416807 1039 ntBASIC17.66■□□□□ 0.42
CDKL5O76039 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.66■□□□□ 0.42
CDKL5O76039 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.66■□□□□ 0.42
CDKL5O76039 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.66■□□□□ 0.42
CDKL5O76039 AP001063.1-201ENST00000568332 529 ntBASIC17.66■□□□□ 0.42
CDKL5O76039 TP53TG3HP-202ENST00000569755 579 ntBASIC17.66■□□□□ 0.42
CDKL5O76039 CTBP2P3-201ENST00000585629 1255 ntBASIC17.66■□□□□ 0.42
CDKL5O76039 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.66■□□□□ 0.42
CDKL5O76039 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 AC018442.1-201ENST00000421439 2061 ntBASIC17.66■□□□□ 0.42
CDKL5O76039 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
CDKL5O76039 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDKL5O76039 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CDKL5O76039 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.65■□□□□ 0.42
CDKL5O76039 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDKL5O76039 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.65■□□□□ 0.42
CDKL5O76039 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.65■□□□□ 0.42
CDKL5O76039 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CDKL5O76039 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.65■□□□□ 0.42
CDKL5O76039 KRT18P25-201ENST00000508931 1278 ntBASIC17.65■□□□□ 0.42
CDKL5O76039 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.65■□□□□ 0.42
CDKL5O76039 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.65■□□□□ 0.42
CDKL5O76039 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDKL5O76039 WFDC1-204ENST00000613603 549 ntBASIC17.65■□□□□ 0.42
CDKL5O76039 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.65■□□□□ 0.42
CDKL5O76039 CU634019.7-201ENST00000624153 1185 ntBASIC17.65■□□□□ 0.42
CDKL5O76039 AC005252.2-201ENST00000624630 1141 ntBASIC17.65■□□□□ 0.42
CDKL5O76039 FP236241.2-201ENST00000624906 1185 ntBASIC17.65■□□□□ 0.42
CDKL5O76039 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.65■□□□□ 0.42
CDKL5O76039 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.65■□□□□ 0.42
CDKL5O76039 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDKL5O76039 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDKL5O76039 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDKL5O76039 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDKL5O76039 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
CDKL5O76039 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDKL5O76039 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CDKL5O76039 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CDKL5O76039 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.64■□□□□ 0.41
CDKL5O76039 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDKL5O76039 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms