Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AC023090.2-201ENST00000625182 2110 ntBASIC11.18□□□□□ -0.62
SMKR1H3BMG3 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 AL356585.2-201ENST00000625078 2396 ntBASIC11.17□□□□□ -0.62
SMKR1H3BMG3 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CRYGEP-201ENST00000412192 528 ntBASIC11.17□□□□□ -0.62
SMKR1H3BMG3 NME4-207ENST00000450036 985 ntTSL 3 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 AC023141.13-201ENST00000604991 943 ntBASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 USP3-204ENST00000540797 5474 ntTSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 MEX3B-202ENST00000558133 4333 ntBASIC11.17□□□□□ -0.62
SMKR1H3BMG3 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
SMKR1H3BMG3 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 AL731571.1-201ENST00000617058 5428 ntBASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
SMKR1H3BMG3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms