Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 ZBTB45P1-201ENST00000452761 1456 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC018638.5-201ENST00000450885 754 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC147876.1-201ENST00000504408 322 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 IGHV1-12-201ENST00000518307 205 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 AP003040.1-201ENST00000532044 1024 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC023968.2-201ENST00000560593 1049 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC005915.1-201ENST00000624912 2018 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 KRT8P6-201ENST00000399259 1207 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 GGTLC4P-201ENST00000402176 664 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 MED15P3-201ENST00000413613 326 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC108734.2-201ENST00000420887 1069 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 AL773545.2-201ENST00000442149 472 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 AC084364.1-201ENST00000551967 1556 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 SRP14-208ENST00000560773 468 ntTSL 3 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC11.48□□□□□ -0.57
COL6A5A8TX70 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 HLA-DMA-202ENST00000395303 1007 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AC025186.1-201ENST00000478174 870 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 RN7SL530P-201ENST00000485097 298 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 AC006122.1-201ENST00000493323 440 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AL022334.2-201ENST00000610000 484 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AC009145.4-201ENST00000625119 1294 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AC078925.2-201ENST00000624013 1973 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 AHCYP4-201ENST00000419201 1315 ntBASIC11.47□□□□□ -0.57
COL6A5A8TX70 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
COL6A5A8TX70 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC11.47□□□□□ -0.57
COL6A5A8TX70 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms