Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 MST1P2-201ENST00000457982 2291 ntBASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 Z97205.2-201ENST00000564697 1639 ntBASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 MED15P5-201ENST00000423150 992 ntBASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 ALG1L8P-201ENST00000533887 760 ntBASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 IL9RP2-201ENST00000423948 1312 ntBASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC28BQ9BUN5 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.83□□□□□ -0.03
CCDC28BQ9BUN5 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 KRT18P64-201ENST00000434946 1219 ntBASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 RN7SL828P-201ENST00000607615 303 ntBASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC28BQ9BUN5 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC28BQ9BUN5 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 206.5 ms