Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 AC074044.1-201ENST00000609673 707 ntBASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM56Q9BRZ2 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.58■□□□□ 0.09
TRIM56Q9BRZ2 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.58■□□□□ 0.09
TRIM56Q9BRZ2 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM56Q9BRZ2 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM56Q9BRZ2 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 AL133267.1-201ENST00000398220 340 ntBASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 SPDYE18-201ENST00000510091 1050 ntBASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 AC069120.2-201ENST00000524091 540 ntBASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM56Q9BRZ2 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.57■□□□□ 0.08
TRIM56Q9BRZ2 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms