Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PKIG-203ENST00000372887 769 ntTSL 3 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 CENPM-205ENST00000404067 905 ntTSL 3 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 CENPM-206ENST00000407253 818 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 CNN2P2-201ENST00000443536 909 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 AP006288.1-201ENST00000446065 395 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 CNN2P3-201ENST00000450201 906 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 AC000095.1-201ENST00000603208 874 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 TEX28P1-201ENST00000613479 1221 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 TEX28P2-201ENST00000617764 1221 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 AL136317.3-201ENST00000618497 906 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 AC018442.1-201ENST00000421439 2061 ntBASIC11.45□□□□□ -0.58
LINC00477Q96M19 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 USP35-204ENST00000530267 2419 ntTSL 2 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
LINC00477Q96M19 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 SUN1-204ENST00000403868 978 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 PPP6R2P1-201ENST00000450880 1275 ntBASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 LY6E-204ENST00000519546 971 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL512361.1-201ENST00000554200 418 ntBASIC11.44□□□□□ -0.58
LINC00477Q96M19 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL138828.2-201ENST00000615812 383 ntBASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms