Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SGSM1-201ENST00000400358 6643 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 MYRF-201ENST00000265460 5745 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC092139.4-201ENST00000624318 2794 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ZNF773-205ENST00000599847 5832 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC135782.3-201ENST00000562782 2105 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 DUSP22-211ENST00000604971 3824 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AL391845.2-201ENST00000443930 1954 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 NCLP1-201ENST00000445357 1963 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC010970.1-201ENST00000445125 1848 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 GEMIN5-201ENST00000285873 5397 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 HBZP1-201ENST00000354915 429 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ESRRAP1-201ENST00000400596 1257 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 GUSBP5-201ENST00000418136 578 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AP003733.1-201ENST00000491725 852 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC131009.4-201ENST00000624048 1740 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC124319.4-201ENST00000622931 2161 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 HERC6-202ENST00000273960 3473 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 IPO7-201ENST00000379719 6191 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 C1RL-201ENST00000266542 3394 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AP3S2-216ENST00000617003 1561 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 PCDHB19P-202ENST00000625133 2914 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 FLJ30679-201ENST00000624773 1980 ntBASIC9.41□□□□□ -0.9
LINC00643Q86TS7 RYR1-202ENST00000359596 15117 ntAPPRIS P3 TSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ADAMTSL2-202ENST00000393060 3725 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 KIF25-AS1-202ENST00000456585 2795 ntTSL 2 BASIC9.41□□□□□ -0.9
LINC00643Q86TS7 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 VASH2-203ENST00000366965 3572 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PHYHIP-201ENST00000321613 3099 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 RAB3IP-212ENST00000550536 9646 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PTPRG-201ENST00000295874 4650 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 EVA1A-201ENST00000233712 1815 ntAPPRIS P2 TSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 AC215219.1-201ENST00000400706 1817 ntBASIC9.4□□□□□ -0.9
LINC00643Q86TS7 MAST4-202ENST00000403625 10711 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms