RNA–Protein interactions for RNA: ENST00000273960.7

HERC6-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 6, humanhuman

TSL 1 (best) BASIC

Gene HERC6, Length 3,473 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6-202ENST00000273960 NISCHQ9Y2I1 1504 aa24.38■■□□□ 1.49
HERC6-202ENST00000273960 DCAF8L2P0C7V8 631 aa21.79■■□□□ 1.08
HERC6-202ENST00000273960 PPARGC1BQ86YN6 1023 aaKnown RBP21.71■■□□□ 1.07
HERC6-202ENST00000273960 SHROOM4Q9ULL8 1493 aa21.67■■□□□ 1.06
HERC6-202ENST00000273960 HRCP23327 699 aa21.65■■□□□ 1.06
HERC6-202ENST00000273960 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
HERC6-202ENST00000273960 PCGF6Q9BYE7 350 aa21.57■■□□□ 1.04
HERC6-202ENST00000273960 MYO15BQ96JP2 1530 aa20.88■□□□□ 0.93
HERC6-202ENST00000273960 PELP1Q8IZL8 1130 aaKnown RBP20.87■□□□□ 0.93
HERC6-202ENST00000273960 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
HERC6-202ENST00000273960 SCAF1Q9H7N4 1312 aaKnown RBP20.75■□□□□ 0.91
HERC6-202ENST00000273960 LOC105371045A0A1W2PR82 267 aa20.74■□□□□ 0.91
HERC6-202ENST00000273960 EHMT2Q96KQ7 1210 aa20.46■□□□□ 0.87
HERC6-202ENST00000273960 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
HERC6-202ENST00000273960 TRIM26Q12899 539 aaPredicted RBP20.4■□□□□ 0.86
HERC6-202ENST00000273960 CCDC180Q9P1Z9 1646 aa20.39■□□□□ 0.85
HERC6-202ENST00000273960 NEUROD1Q13562 356 aa20.19■□□□□ 0.82
HERC6-202ENST00000273960 ABCC9O60706 1549 aa20.17■□□□□ 0.82
HERC6-202ENST00000273960 GTF3C3Q9Y5Q9 886 aa20.17■□□□□ 0.82
HERC6-202ENST00000273960 FAM9AQ8IZU1 332 aaPredicted RBP20.15■□□□□ 0.82
HERC6-202ENST00000273960 ZEB1P37275 1124 aaPredicted RBP20.11■□□□□ 0.81
HERC6-202ENST00000273960 ACIN1Q9UKV3 1341 aaKnown RBP20.08■□□□□ 0.81
HERC6-202ENST00000273960 DCAF1Q9Y4B6 1507 aa20.07■□□□□ 0.8
HERC6-202ENST00000273960 YTHDC1Q96MU7 727 aaKnown RBP19.96■□□□□ 0.79
HERC6-202ENST00000273960 MYT1Q01538 1121 aa19.96■□□□□ 0.79
HERC6-202ENST00000273960 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.95■□□□□ 0.78
HERC6-202ENST00000273960 TTBK1Q5TCY1 1321 aaPredicted RBP19.91■□□□□ 0.78
HERC6-202ENST00000273960 CENPBP07199 599 aaPredicted RBP19.85■□□□□ 0.77
HERC6-202ENST00000273960 CCER1Q8TC90 406 aaPredicted RBP19.85■□□□□ 0.77
HERC6-202ENST00000273960 SCRIBQ14160 1630 aa19.8■□□□□ 0.76
HERC6-202ENST00000273960 DIEXFQ68CQ4 756 aaKnown RBP19.79■□□□□ 0.76
HERC6-202ENST00000273960 TRIM41Q8WV44 630 aa19.66■□□□□ 0.74
HERC6-202ENST00000273960 PABPN1Q86U42 306 aaKnown RBP eCLIP19.57■□□□□ 0.72
HERC6-202ENST00000273960 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
HERC6-202ENST00000273960 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.68
HERC6-202ENST00000273960 MIER1Q8N108 512 aa19.32■□□□□ 0.68
HERC6-202ENST00000273960 ZNF316A6NFI3 1004 aaPredicted RBP19.23■□□□□ 0.67
HERC6-202ENST00000273960 NACADO15069 1562 aa19.2■□□□□ 0.66
HERC6-202ENST00000273960 BCL11AQ9H165 835 aa19.2■□□□□ 0.66
HERC6-202ENST00000273960 MROH2BQ7Z745 1585 aa19.09■□□□□ 0.65
HERC6-202ENST00000273960 RB1CC1Q8TDY2 1594 aa19.09■□□□□ 0.65
HERC6-202ENST00000273960 HNRNPUL2Q1KMD3 747 aaKnown RBP19.07■□□□□ 0.64
HERC6-202ENST00000273960 BCANQ96GW7 911 aa19.07■□□□□ 0.64
HERC6-202ENST00000273960 RANGAP1P46060 587 aaPredicted RBP19.02■□□□□ 0.64
HERC6-202ENST00000273960 CSRNP3Q8WYN3 585 aa19■□□□□ 0.63
HERC6-202ENST00000273960 ANP32EQ9BTT0 268 aa18.99■□□□□ 0.63
HERC6-202ENST00000273960 SUPT16HQ9Y5B9 1047 aaKnown RBP18.97■□□□□ 0.63
HERC6-202ENST00000273960 TSHZ2Q9NRE2 1034 aa18.93■□□□□ 0.62
HERC6-202ENST00000273960 WIZO95785 1651 aa18.93■□□□□ 0.62
HERC6-202ENST00000273960 UBTFP17480 764 aaKnown RBP18.88■□□□□ 0.61
HERC6-202ENST00000273960 BAZ1AQ9NRL2 1556 aaPredicted RBP18.75■□□□□ 0.59
HERC6-202ENST00000273960 ITGAEP38570 1179 aa18.69■□□□□ 0.58
HERC6-202ENST00000273960 KCNH8Q96L42 1107 aa18.68■□□□□ 0.58
HERC6-202ENST00000273960 FKBP8Q14318 412 aa18.66■□□□□ 0.58
HERC6-202ENST00000273960 ABCC8Q09428 1581 aa18.64■□□□□ 0.57
HERC6-202ENST00000273960 CCDC88BA6NC98 1476 aa18.63■□□□□ 0.57
HERC6-202ENST00000273960 SMARCA4P51532 1647 aa18.55■□□□□ 0.56
HERC6-202ENST00000273960 CEP162Q5TB80 1403 aa18.52■□□□□ 0.56
HERC6-202ENST00000273960 RBM19Q9Y4C8 960 aaKnown RBP18.52■□□□□ 0.55
HERC6-202ENST00000273960 SOGA1O94964 1423 aa18.5■□□□□ 0.55
HERC6-202ENST00000273960 ERICH6Q7L0X2 663 aa18.48■□□□□ 0.55
HERC6-202ENST00000273960 APLP2Q06481 763 aa18.47■□□□□ 0.55
HERC6-202ENST00000273960 TOP2AP11388 1531 aaKnown RBP18.46■□□□□ 0.55
HERC6-202ENST00000273960 UNC13AQ9UPW8 1703 aa18.45■□□□□ 0.54
HERC6-202ENST00000273960 PRKCSHP14314 528 aaPredicted RBP18.44■□□□□ 0.54
HERC6-202ENST00000273960 TRIM52Q96A61 297 aa18.43■□□□□ 0.54
HERC6-202ENST00000273960 BAZ1BQ9UIG0 1483 aaKnown RBP18.43■□□□□ 0.54
HERC6-202ENST00000273960 NEFLP07196 543 aa18.43■□□□□ 0.54
HERC6-202ENST00000273960 BICRAQ9NZM4 1560 aa18.4■□□□□ 0.54
HERC6-202ENST00000273960 IRX6P78412 446 aaPredicted RBP18.39■□□□□ 0.53
HERC6-202ENST00000273960 RUSC2Q8N2Y8 1516 aa18.38■□□□□ 0.53
HERC6-202ENST00000273960 SMARCA2P51531 1590 aa18.38■□□□□ 0.53
HERC6-202ENST00000273960 HIRIP3Q9BW71 556 aaPredicted RBP18.36■□□□□ 0.53
HERC6-202ENST00000273960 CLSPNQ9HAW4 1339 aa18.36■□□□□ 0.53
HERC6-202ENST00000273960 WRNQ14191 1432 aaPredicted RBP eCLIP18.36■□□□□ 0.53
HERC6-202ENST00000273960 MSH5O43196 834 aa18.35■□□□□ 0.53
HERC6-202ENST00000273960 DDX10Q13206 875 aaKnown RBP18.33■□□□□ 0.53
HERC6-202ENST00000273960 ATAD2BQ9ULI0 1458 aa18.33■□□□□ 0.52
HERC6-202ENST00000273960 ATP1B4Q9UN42 357 aaPredicted RBP18.31■□□□□ 0.52
HERC6-202ENST00000273960 NBR1Q14596 966 aa18.22■□□□□ 0.51
HERC6-202ENST00000273960 TNIKQ9UKE5 1360 aa18.2■□□□□ 0.5
HERC6-202ENST00000273960 ANO8Q9HCE9 1232 aaPredicted RBP18.18■□□□□ 0.5
HERC6-202ENST00000273960 DEKP35659 375 aaKnown RBP18.15■□□□□ 0.5
HERC6-202ENST00000273960 P3H3Q8IVL6 736 aa18.12■□□□□ 0.49
HERC6-202ENST00000273960 CCDC136Q96JN2 1154 aa18.1■□□□□ 0.49
HERC6-202ENST00000273960 CDK11AQ9UQ88 783 aaPredicted RBP18.1■□□□□ 0.49
HERC6-202ENST00000273960 RTN4Q9NQC3 1192 aaKnown RBP18.09■□□□□ 0.49
HERC6-202ENST00000273960 DHX57Q6P158 1386 aaKnown RBP18.09■□□□□ 0.49
HERC6-202ENST00000273960 GOLGA3Q08378 1498 aa18.07■□□□□ 0.48
HERC6-202ENST00000273960 CLIP1P30622 1438 aa18.05■□□□□ 0.48
HERC6-202ENST00000273960 SIN3AQ96ST3 1273 aa18.02■□□□□ 0.48
HERC6-202ENST00000273960 SYNJ1O43426 1573 aa18.02■□□□□ 0.48
HERC6-202ENST00000273960 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
HERC6-202ENST00000273960 EEA1Q15075 1411 aa18.01■□□□□ 0.47
HERC6-202ENST00000273960 KANK4Q5T7N3 995 aaPredicted RBP18■□□□□ 0.47
HERC6-202ENST00000273960 HNRNPUQ00839 825 aaKnown RBP eCLIP17.99■□□□□ 0.47
HERC6-202ENST00000273960 ANP32CO43423 234 aa17.98■□□□□ 0.47
HERC6-202ENST00000273960 RAPGEF2Q9Y4G8 1499 aa17.97■□□□□ 0.47
HERC6-202ENST00000273960 SALL2Q9Y467 1007 aaPredicted RBP17.97■□□□□ 0.47
HERC6-202ENST00000273960 CNGB1Q14028 1251 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms