Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AC012508.2-201ENST00000567613 1472 ntBASIC20.24■□□□□ 0.83
NPHP3Q7Z494 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AL354861.1-201ENST00000445213 355 ntBASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AP000911.2-201ENST00000534330 502 ntBASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 LINC00431-202ENST00000636375 159 ntBASIC20.24■□□□□ 0.83
NPHP3Q7Z494 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPHP3Q7Z494 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 PCDHA14-201ENST00000506751 2298 ntBASIC20.23■□□□□ 0.83
NPHP3Q7Z494 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 AC009090.5-201ENST00000624886 2285 ntBASIC20.23■□□□□ 0.83
NPHP3Q7Z494 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 AC026410.1-201ENST00000507366 1101 ntBASIC20.23■□□□□ 0.83
NPHP3Q7Z494 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 RN7SL470P-201ENST00000583069 259 ntBASIC20.23■□□□□ 0.83
NPHP3Q7Z494 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPHP3Q7Z494 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AL118508.1-201ENST00000613502 2345 ntBASIC20.22■□□□□ 0.83
NPHP3Q7Z494 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 CICP11-201ENST00000434745 2827 ntBASIC20.22■□□□□ 0.83
NPHP3Q7Z494 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AC004837.1-201ENST00000446267 564 ntBASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 MIR3180-2-201ENST00000581748 88 ntBASIC20.22■□□□□ 0.83
NPHP3Q7Z494 ZBED1P1-201ENST00000502364 1930 ntBASIC20.22■□□□□ 0.83
NPHP3Q7Z494 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NPHP3Q7Z494 IL9RP3-201ENST00000442856 1674 ntBASIC20.22■□□□□ 0.83
NPHP3Q7Z494 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP3Q7Z494 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms