Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL8A1P27658 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.28□□□□□ -0.28
COL8A1P27658 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL8A1P27658 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.27□□□□□ -0.28
COL8A1P27658 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.27□□□□□ -0.28
COL8A1P27658 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.27□□□□□ -0.28
COL8A1P27658 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL8A1P27658 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.28
COL8A1P27658 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
COL8A1P27658 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.27□□□□□ -0.28
COL8A1P27658 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.27□□□□□ -0.29
COL8A1P27658 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
COL8A1P27658 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.27□□□□□ -0.29
COL8A1P27658 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.27□□□□□ -0.29
COL8A1P27658 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
COL8A1P27658 AC103810.10-201ENST00000606504 343 ntBASIC13.27□□□□□ -0.29
COL8A1P27658 AC090164.2-201ENST00000611487 516 ntBASIC13.27□□□□□ -0.29
COL8A1P27658 AC242376.2-201ENST00000619355 883 ntBASIC13.27□□□□□ -0.29
COL8A1P27658 AC138466.4-201ENST00000623965 852 ntBASIC13.27□□□□□ -0.29
COL8A1P27658 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.27□□□□□ -0.29
COL8A1P27658 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
COL8A1P27658 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.27□□□□□ -0.29
COL8A1P27658 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.27□□□□□ -0.29
COL8A1P27658 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.27□□□□□ -0.29
COL8A1P27658 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.27□□□□□ -0.29
COL8A1P27658 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.27□□□□□ -0.29
COL8A1P27658 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL8A1P27658 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.27□□□□□ -0.29
COL8A1P27658 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL8A1P27658 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL8A1P27658 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
COL8A1P27658 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL8A1P27658 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms