Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16■□□□□ 0.15
BDNFP23560 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16■□□□□ 0.15
BDNFP23560 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16■□□□□ 0.15
BDNFP23560 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16■□□□□ 0.15
BDNFP23560 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16■□□□□ 0.15
BDNFP23560 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16■□□□□ 0.15
BDNFP23560 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16■□□□□ 0.15
BDNFP23560 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16■□□□□ 0.15
BDNFP23560 DUX4L45-201ENST00000566406 1057 ntBASIC16■□□□□ 0.15
BDNFP23560 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16■□□□□ 0.15
BDNFP23560 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16■□□□□ 0.15
BDNFP23560 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16■□□□□ 0.15
BDNFP23560 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
BDNFP23560 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
BDNFP23560 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 AL109954.1-202ENST00000564051 2148 ntBASIC16■□□□□ 0.15
BDNFP23560 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16■□□□□ 0.15
BDNFP23560 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
BDNFP23560 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
BDNFP23560 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.99■□□□□ 0.15
BDNFP23560 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 AC091951.1-201ENST00000512854 2465 ntBASIC15.99■□□□□ 0.15
BDNFP23560 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
BDNFP23560 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.99■□□□□ 0.15
BDNFP23560 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.99■□□□□ 0.15
BDNFP23560 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.99■□□□□ 0.15
BDNFP23560 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 LILRP1-201ENST00000444199 1370 ntBASIC15.99■□□□□ 0.15
BDNFP23560 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.99■□□□□ 0.15
BDNFP23560 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
BDNFP23560 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
BDNFP23560 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.98■□□□□ 0.15
BDNFP23560 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.98■□□□□ 0.15
BDNFP23560 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
BDNFP23560 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
BDNFP23560 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.98■□□□□ 0.15
BDNFP23560 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 FAM8A4P-201ENST00000435433 1213 ntBASIC15.98■□□□□ 0.15
BDNFP23560 AL355994.2-201ENST00000447882 704 ntBASIC15.98■□□□□ 0.15
BDNFP23560 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.98■□□□□ 0.15
BDNFP23560 RPL13AP20-201ENST00000459725 609 ntBASIC15.98■□□□□ 0.15
BDNFP23560 AC092658.1-201ENST00000505836 891 ntBASIC15.98■□□□□ 0.15
BDNFP23560 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms