Protein–RNA interactions for Protein: P13569

CFTR, Cystic fibrosis transmembrane conductance regulator, humanhuman

Predictions only

Length 1,480 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFTRP13569 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC25.16■■□□□ 1.62
CFTRP13569 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC25.16■■□□□ 1.62
CFTRP13569 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC25.16■■□□□ 1.62
CFTRP13569 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC25.16■■□□□ 1.62
CFTRP13569 AC087481.3-201ENST00000602886 1894 ntBASIC25.16■■□□□ 1.62
CFTRP13569 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 AC021305.1-201ENST00000520656 1514 ntBASIC25.16■■□□□ 1.62
CFTRP13569 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC25.16■■□□□ 1.62
CFTRP13569 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC25.16■■□□□ 1.62
CFTRP13569 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC25.16■■□□□ 1.62
CFTRP13569 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CFTRP13569 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
CFTRP13569 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC25.15■■□□□ 1.62
CFTRP13569 RNVU1-8-201ENST00000364272 125 ntBASIC25.15■■□□□ 1.62
CFTRP13569 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
CFTRP13569 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CFTRP13569 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC25.15■■□□□ 1.62
CFTRP13569 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 AC226150.1-201ENST00000544259 466 ntBASIC25.15■■□□□ 1.62
CFTRP13569 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC25.15■■□□□ 1.62
CFTRP13569 USB1-205ENST00000561743 1135 ntTSL 3 BASIC25.15■■□□□ 1.62
CFTRP13569 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC25.15■■□□□ 1.62
CFTRP13569 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC25.15■■□□□ 1.62
CFTRP13569 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC25.15■■□□□ 1.62
CFTRP13569 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 AL136172.1-201ENST00000598590 1394 ntBASIC25.15■■□□□ 1.62
CFTRP13569 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CFTRP13569 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CFTRP13569 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC25.15■■□□□ 1.62
CFTRP13569 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC25.15■■□□□ 1.62
CFTRP13569 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC25.15■■□□□ 1.62
CFTRP13569 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC25.15■■□□□ 1.62
CFTRP13569 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CFTRP13569 NAA40-205ENST00000539656 577 ntTSL 4 BASIC25.15■■□□□ 1.62
CFTRP13569 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC25.15■■□□□ 1.62
CFTRP13569 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC25.15■■□□□ 1.62
CFTRP13569 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC25.14■■□□□ 1.62
CFTRP13569 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CFTRP13569 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CFTRP13569 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CFTRP13569 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CFTRP13569 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CFTRP13569 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CFTRP13569 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC25.14■■□□□ 1.62
CFTRP13569 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC25.14■■□□□ 1.62
CFTRP13569 AP005117.1-202ENST00000581724 1908 ntBASIC25.14■■□□□ 1.62
CFTRP13569 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC25.14■■□□□ 1.61
CFTRP13569 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC25.14■■□□□ 1.61
CFTRP13569 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC25.14■■□□□ 1.61
CFTRP13569 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
CFTRP13569 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC25.14■■□□□ 1.61
CFTRP13569 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC25.14■■□□□ 1.61
CFTRP13569 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC25.14■■□□□ 1.61
CFTRP13569 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 DRG2-220ENST00000583355 891 ntTSL 3 BASIC25.14■■□□□ 1.61
CFTRP13569 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC25.14■■□□□ 1.61
CFTRP13569 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC25.14■■□□□ 1.61
CFTRP13569 AC006483.2-201ENST00000609813 515 ntBASIC25.14■■□□□ 1.61
CFTRP13569 HELLS-212ENST00000630929 400 ntTSL 5 BASIC25.14■■□□□ 1.61
CFTRP13569 CTBP2P8-201ENST00000422584 1330 ntBASIC25.14■■□□□ 1.61
CFTRP13569 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC25.14■■□□□ 1.61
CFTRP13569 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
CFTRP13569 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC25.13■■□□□ 1.61
CFTRP13569 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC25.13■■□□□ 1.61
CFTRP13569 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CFTRP13569 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
CFTRP13569 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFTRP13569 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC25.13■■□□□ 1.61
CFTRP13569 AC026470.1-201ENST00000478038 846 ntBASIC25.13■■□□□ 1.61
CFTRP13569 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC25.13■■□□□ 1.61
CFTRP13569 HMGB1P24-201ENST00000611897 328 ntBASIC25.13■■□□□ 1.61
CFTRP13569 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms