Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.16■□□□□ 0.66
NPHP1O15259 RN7SL720P-201ENST00000488178 304 ntBASIC19.16■□□□□ 0.66
NPHP1O15259 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.16■□□□□ 0.66
NPHP1O15259 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC19.16■□□□□ 0.66
NPHP1O15259 AC022616.1-201ENST00000518688 554 ntBASIC19.16■□□□□ 0.66
NPHP1O15259 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 MIR3619-201ENST00000579667 83 ntBASIC19.16■□□□□ 0.66
NPHP1O15259 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
NPHP1O15259 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
NPHP1O15259 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.15■□□□□ 0.66
NPHP1O15259 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
NPHP1O15259 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
NPHP1O15259 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 SPTLC1P5-201ENST00000450718 252 ntBASIC19.15■□□□□ 0.66
NPHP1O15259 AL391280.1-201ENST00000506969 1062 ntBASIC19.15■□□□□ 0.66
NPHP1O15259 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.15■□□□□ 0.66
NPHP1O15259 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.15■□□□□ 0.66
NPHP1O15259 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC19.15■□□□□ 0.66
NPHP1O15259 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.15■□□□□ 0.66
NPHP1O15259 AC073413.1-201ENST00000603927 732 ntBASIC19.15■□□□□ 0.66
NPHP1O15259 MIR6727-201ENST00000620702 65 ntBASIC19.15■□□□□ 0.66
NPHP1O15259 AP001002.3-201ENST00000623482 206 ntBASIC19.15■□□□□ 0.66
NPHP1O15259 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.15■□□□□ 0.66
NPHP1O15259 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
NPHP1O15259 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.15■□□□□ 0.66
NPHP1O15259 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPHP1O15259 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.15■□□□□ 0.66
NPHP1O15259 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.14■□□□□ 0.66
NPHP1O15259 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.14■□□□□ 0.66
NPHP1O15259 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
NPHP1O15259 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
NPHP1O15259 AL161772.1-201ENST00000610494 4412 ntBASIC19.14■□□□□ 0.66
NPHP1O15259 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
NPHP1O15259 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
NPHP1O15259 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
NPHP1O15259 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.14■□□□□ 0.65
NPHP1O15259 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
NPHP1O15259 B9D1-203ENST00000395615 805 ntTSL 3 BASIC19.14■□□□□ 0.65
NPHP1O15259 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 FXNP2-201ENST00000411625 547 ntBASIC19.14■□□□□ 0.65
NPHP1O15259 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.14■□□□□ 0.65
NPHP1O15259 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC19.14■□□□□ 0.65
NPHP1O15259 AC005730.2-201ENST00000564549 1184 ntBASIC19.14■□□□□ 0.65
NPHP1O15259 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
NPHP1O15259 AC097724.1-201ENST00000609581 426 ntBASIC19.14■□□□□ 0.65
NPHP1O15259 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.14■□□□□ 0.65
NPHP1O15259 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
NPHP1O15259 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPHP1O15259 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
NPHP1O15259 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NPHP1O15259 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
NPHP1O15259 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.13■□□□□ 0.65
NPHP1O15259 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.13■□□□□ 0.65
NPHP1O15259 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.13■□□□□ 0.65
NPHP1O15259 HIST2H2BB-201ENST00000449108 381 ntBASIC19.13■□□□□ 0.65
NPHP1O15259 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC19.13■□□□□ 0.65
NPHP1O15259 AC106794.1-201ENST00000506935 792 ntBASIC19.13■□□□□ 0.65
NPHP1O15259 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.13■□□□□ 0.65
NPHP1O15259 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms