Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 AC009779.1-201ENST00000551138 283 ntBASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 STUB1-204ENST00000564370 875 ntTSL 2 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 DUX4L47-201ENST00000566374 394 ntBASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 MIR4683-201ENST00000579659 81 ntBASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 IRF3-215ENST00000596822 823 ntTSL 3 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 AC025271.4-201ENST00000621477 1726 ntBASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AL137783.1-201ENST00000623494 1896 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 HLA-DQB2-231ENST00000435145 2026 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC136621.1-201ENST00000624017 2304 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC073150.1-201ENST00000450406 1084 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 RNMTL1P1-201ENST00000454103 560 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 RN7SL163P-201ENST00000583100 276 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 AC138466.3-201ENST00000619983 221 ntBASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC28.53■■■□□ 2.16
SHROOM4Q9ULL8 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 RCC2P8-201ENST00000502779 1035 ntBASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SHROOM4Q9ULL8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.16
SHROOM4Q9ULL8 AL360270.3-201ENST00000609118 1348 ntBASIC28.51■■■□□ 2.16
SHROOM4Q9ULL8 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.16
SHROOM4Q9ULL8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
SHROOM4Q9ULL8 GSN-206ENST00000394353 2311 ntTSL 2 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 RBM38-204ENST00000371219 760 ntTSL 2 BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 AC021723.1-201ENST00000486306 515 ntBASIC28.51■■■□□ 2.15
SHROOM4Q9ULL8 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC28.51■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms