Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 BRI3BPP1-201ENST00000594224 787 ntBASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 SLC7A15P-201ENST00000424028 1363 ntBASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRRC40Q9H9A6 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AL158070.2-201ENST00000623713 1621 ntBASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AC104596.2-201ENST00000512793 793 ntBASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRRC40Q9H9A6 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 INTS4P2-202ENST00000614726 2019 ntBASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 AL157414.3-201ENST00000624276 1954 ntBASIC15.47■□□□□ 0.07
LRRC40Q9H9A6 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms