Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RSPO3Q9BXY4 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 FER1L4-210ENST00000615531 5998 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AL139094.1-201ENST00000405549 1188 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TPT1P11-201ENST00000458482 498 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC093214.1-201ENST00000511688 1107 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC120045.2-201ENST00000567334 178 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC138761.1-201ENST00000584393 385 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 CHCHD2P3-201ENST00000603038 451 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AC093813.1-201ENST00000605066 256 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 AGGF1P1-201ENST00000509500 2073 ntBASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.92□□□□□ -0.18
RSPO3Q9BXY4 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CICP16-201ENST00000502609 2813 ntBASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 PMS2P2-201ENST00000425039 1128 ntBASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 AL359711.2-201ENST00000563105 872 ntBASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 INTS4P2-202ENST00000614726 2019 ntBASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RSPO3Q9BXY4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms