Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 AL662799.1-202ENST00000614205 422 ntBASIC17.36■□□□□ 0.37
ATL3Q6DD88 AL603764.1-201ENST00000636452 321 ntBASIC17.36■□□□□ 0.37
ATL3Q6DD88 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATL3Q6DD88 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.36■□□□□ 0.37
ATL3Q6DD88 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 UCKL1-AS1-201ENST00000623569 3602 ntBASIC17.35■□□□□ 0.37
ATL3Q6DD88 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 MIR943-201ENST00000401286 94 ntBASIC17.35■□□□□ 0.37
ATL3Q6DD88 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 RN7SL399P-201ENST00000471648 279 ntBASIC17.35■□□□□ 0.37
ATL3Q6DD88 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.35■□□□□ 0.37
ATL3Q6DD88 AGGF1P1-201ENST00000509500 2073 ntBASIC17.35■□□□□ 0.37
ATL3Q6DD88 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATL3Q6DD88 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AL589987.1-201ENST00000453380 819 ntBASIC17.34■□□□□ 0.37
ATL3Q6DD88 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AC022447.6-201ENST00000515522 438 ntBASIC17.34■□□□□ 0.37
ATL3Q6DD88 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AC135586.1-201ENST00000539323 574 ntBASIC17.34■□□□□ 0.37
ATL3Q6DD88 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 RRP7BP-205ENST00000566851 833 ntBASIC17.34■□□□□ 0.37
ATL3Q6DD88 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AL049840.4-201ENST00000602422 811 ntBASIC17.34■□□□□ 0.37
ATL3Q6DD88 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.34■□□□□ 0.37
ATL3Q6DD88 AC092135.3-201ENST00000624151 1846 ntBASIC17.34■□□□□ 0.37
ATL3Q6DD88 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATL3Q6DD88 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
ATL3Q6DD88 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.33■□□□□ 0.37
ATL3Q6DD88 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATL3Q6DD88 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms