Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.37□□□□□ -0.27
TFF3Q07654 EIF3FP3-201ENST00000434851 1086 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.37□□□□□ -0.27
TFF3Q07654 POM121L9P-203ENST00000441984 1285 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.37□□□□□ -0.27
TFF3Q07654 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.37□□□□□ -0.27
TFF3Q07654 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC13.37□□□□□ -0.27
TFF3Q07654 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.37□□□□□ -0.27
TFF3Q07654 AP003171.2-201ENST00000528208 925 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 AC073413.1-201ENST00000603927 732 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.37□□□□□ -0.27
TFF3Q07654 AC091812.3-201ENST00000621362 345 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
TFF3Q07654 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 AL158070.2-201ENST00000623713 1621 ntBASIC13.37□□□□□ -0.27
TFF3Q07654 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.37□□□□□ -0.27
TFF3Q07654 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.37□□□□□ -0.27
TFF3Q07654 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.37□□□□□ -0.27
TFF3Q07654 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
TFF3Q07654 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 AP002414.2-201ENST00000591780 3365 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
TFF3Q07654 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.36□□□□□ -0.27
TFF3Q07654 CYP46A4P-201ENST00000414953 267 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.36□□□□□ -0.27
TFF3Q07654 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.36□□□□□ -0.27
TFF3Q07654 IMP3P2-201ENST00000489760 475 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 AC004066.1-201ENST00000502488 802 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.36□□□□□ -0.27
TFF3Q07654 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.36□□□□□ -0.27
TFF3Q07654 AC097724.1-201ENST00000609581 426 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 ZACNP1-201ENST00000612259 710 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
TFF3Q07654 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 AC069224.1-201ENST00000566372 1715 ntBASIC13.36□□□□□ -0.27
TFF3Q07654 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
TFF3Q07654 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.36□□□□□ -0.27
TFF3Q07654 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms