Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 HLA-K-203ENST00000430151 1046 ntBASIC14.75□□□□□ -0.05
FOXA1P55317 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.75□□□□□ -0.05
FOXA1P55317 FAM86GP-201ENST00000448322 971 ntBASIC14.75□□□□□ -0.05
FOXA1P55317 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.75□□□□□ -0.05
FOXA1P55317 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 MEIS3P1-201ENST00000495167 958 ntBASIC14.75□□□□□ -0.05
FOXA1P55317 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.75□□□□□ -0.05
FOXA1P55317 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.75□□□□□ -0.05
FOXA1P55317 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.75□□□□□ -0.05
FOXA1P55317 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.75□□□□□ -0.05
FOXA1P55317 AC008738.7-201ENST00000609744 511 ntBASIC14.75□□□□□ -0.05
FOXA1P55317 AC004840.1-201ENST00000636359 365 ntBASIC14.75□□□□□ -0.05
FOXA1P55317 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 AC023090.2-201ENST00000625182 2110 ntBASIC14.75□□□□□ -0.05
FOXA1P55317 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
FOXA1P55317 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
FOXA1P55317 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
FOXA1P55317 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
FOXA1P55317 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
FOXA1P55317 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 AC006504.5-208ENST00000588784 2401 ntBASIC14.74□□□□□ -0.05
FOXA1P55317 AL928921.2-201ENST00000641325 2442 ntBASIC14.74□□□□□ -0.05
FOXA1P55317 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
FOXA1P55317 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.74□□□□□ -0.05
FOXA1P55317 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.74□□□□□ -0.05
FOXA1P55317 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 AC241585.1-201ENST00000433527 519 ntBASIC14.74□□□□□ -0.05
FOXA1P55317 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 AC067863.1-201ENST00000494933 530 ntBASIC14.74□□□□□ -0.05
FOXA1P55317 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.74□□□□□ -0.05
FOXA1P55317 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.74□□□□□ -0.05
FOXA1P55317 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 AP001160.2-201ENST00000596071 487 ntBASIC14.74□□□□□ -0.05
FOXA1P55317 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.74□□□□□ -0.05
FOXA1P55317 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
FOXA1P55317 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
FOXA1P55317 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.74□□□□□ -0.05
FOXA1P55317 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms