Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.62■□□□□ 0.25
RFX1P22670 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX1P22670 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX1P22670 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX1P22670 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RFX1P22670 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RFX1P22670 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RFX1P22670 CICP24-201ENST00000605464 2705 ntBASIC16.61■□□□□ 0.25
RFX1P22670 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.61■□□□□ 0.25
RFX1P22670 CTBP2P5-201ENST00000454986 1264 ntBASIC16.61■□□□□ 0.25
RFX1P22670 AC017007.3-201ENST00000479865 435 ntBASIC16.61■□□□□ 0.25
RFX1P22670 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.61■□□□□ 0.25
RFX1P22670 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.61■□□□□ 0.25
RFX1P22670 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.61■□□□□ 0.25
RFX1P22670 RRP7BP-205ENST00000566851 833 ntBASIC16.61■□□□□ 0.25
RFX1P22670 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.61■□□□□ 0.25
RFX1P22670 BTNL10-201ENST00000595971 695 ntBASIC16.61■□□□□ 0.25
RFX1P22670 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.61■□□□□ 0.25
RFX1P22670 AL391069.4-201ENST00000609583 481 ntBASIC16.61■□□□□ 0.25
RFX1P22670 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.61■□□□□ 0.25
RFX1P22670 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RFX1P22670 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RFX1P22670 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 AC018665.1-201ENST00000622927 1362 ntBASIC16.61■□□□□ 0.25
RFX1P22670 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 AC007292.2-201ENST00000593524 1812 ntBASIC16.61■□□□□ 0.25
RFX1P22670 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.61■□□□□ 0.25
RFX1P22670 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RFX1P22670 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.6■□□□□ 0.25
RFX1P22670 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RFX1P22670 AC098850.1-201ENST00000419919 790 ntBASIC16.6■□□□□ 0.25
RFX1P22670 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.6■□□□□ 0.25
RFX1P22670 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
RFX1P22670 AL589987.1-201ENST00000453380 819 ntBASIC16.6■□□□□ 0.25
RFX1P22670 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.6■□□□□ 0.25
RFX1P22670 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 SAMD11P1-201ENST00000571429 661 ntBASIC16.6■□□□□ 0.25
RFX1P22670 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.6■□□□□ 0.25
RFX1P22670 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.6■□□□□ 0.25
RFX1P22670 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RFX1P22670 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX1P22670 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.59■□□□□ 0.25
RFX1P22670 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX1P22670 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX1P22670 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms