Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SDC1P18827 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.52□□□□□ -0.09
SDC1P18827 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SDC1P18827 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SDC1P18827 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 AL137783.1-201ENST00000623494 1896 ntBASIC14.51□□□□□ -0.09
SDC1P18827 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SDC1P18827 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.51□□□□□ -0.09
SDC1P18827 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
SDC1P18827 AC023310.3-201ENST00000557027 670 ntBASIC14.51□□□□□ -0.09
SDC1P18827 AC100756.1-201ENST00000562736 682 ntBASIC14.51□□□□□ -0.09
SDC1P18827 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 AC138749.3-201ENST00000567691 622 ntBASIC14.51□□□□□ -0.09
SDC1P18827 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.51□□□□□ -0.09
SDC1P18827 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.51□□□□□ -0.09
SDC1P18827 AL390955.2-201ENST00000603032 514 ntBASIC14.51□□□□□ -0.09
SDC1P18827 AC116165.1-201ENST00000611806 668 ntBASIC14.51□□□□□ -0.09
SDC1P18827 AL662799.1-202ENST00000614205 422 ntBASIC14.51□□□□□ -0.09
SDC1P18827 AC093512.1-201ENST00000617969 520 ntBASIC14.51□□□□□ -0.09
SDC1P18827 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SDC1P18827 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SDC1P18827 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 AL138799.1-201ENST00000448213 1675 ntBASIC14.51□□□□□ -0.09
SDC1P18827 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.51□□□□□ -0.09
SDC1P18827 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SDC1P18827 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 OR2I1P-210ENST00000642037 4691 ntBASIC14.5□□□□□ -0.09
SDC1P18827 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SDC1P18827 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.5□□□□□ -0.09
SDC1P18827 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 MRPS18AP1-201ENST00000414458 589 ntBASIC14.5□□□□□ -0.09
SDC1P18827 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 VDAC1P7-201ENST00000462417 847 ntBASIC14.5□□□□□ -0.09
SDC1P18827 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.5□□□□□ -0.09
SDC1P18827 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.5□□□□□ -0.09
SDC1P18827 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SDC1P18827 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms