Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.02■□□□□ 0.32
MSH4O15457 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.02■□□□□ 0.32
MSH4O15457 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.02■□□□□ 0.32
MSH4O15457 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.02■□□□□ 0.32
MSH4O15457 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.02■□□□□ 0.31
MSH4O15457 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.02■□□□□ 0.31
MSH4O15457 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.02■□□□□ 0.31
MSH4O15457 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH4O15457 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.02■□□□□ 0.31
MSH4O15457 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.02■□□□□ 0.31
MSH4O15457 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.01■□□□□ 0.31
MSH4O15457 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 FAM8A4P-201ENST00000435433 1213 ntBASIC17.01■□□□□ 0.31
MSH4O15457 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 AL391280.1-201ENST00000506969 1062 ntBASIC17.01■□□□□ 0.31
MSH4O15457 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC17.01■□□□□ 0.31
MSH4O15457 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.01■□□□□ 0.31
MSH4O15457 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 AC106820.3-201ENST00000561653 397 ntBASIC17.01■□□□□ 0.31
MSH4O15457 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.01■□□□□ 0.31
MSH4O15457 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 MIR6752-201ENST00000618442 71 ntBASIC17.01■□□□□ 0.31
MSH4O15457 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.01■□□□□ 0.31
MSH4O15457 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.01■□□□□ 0.31
MSH4O15457 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSH4O15457 AL354989.2-201ENST00000435838 1540 ntBASIC17.01■□□□□ 0.31
MSH4O15457 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17■□□□□ 0.31
MSH4O15457 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17■□□□□ 0.31
MSH4O15457 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17■□□□□ 0.31
MSH4O15457 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17■□□□□ 0.31
MSH4O15457 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17■□□□□ 0.31
MSH4O15457 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17■□□□□ 0.31
MSH4O15457 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17■□□□□ 0.31
MSH4O15457 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 INE2-201ENST00000630399 1874 ntBASIC17■□□□□ 0.31
MSH4O15457 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MSH4O15457 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MSH4O15457 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms