Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC015911.4-201ENST00000588022 1070 ntBASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 AL033527.5-202ENST00000641632 1098 ntBASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC39Q9UFE4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 KLF2P3-201ENST00000451977 1087 ntBASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 AC069120.2-201ENST00000524091 540 ntBASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 INTS4P1-203ENST00000641008 3683 ntBASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC39Q9UFE4 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AC140878.1-201ENST00000565277 250 ntBASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 SPDYE12P-201ENST00000618416 771 ntBASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AC139530.3-201ENST00000620344 690 ntBASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AC073592.8-201ENST00000624126 511 ntBASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms