Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 MIR770-201ENST00000390219 98 ntBASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC109322.1-201ENST00000524499 1264 ntBASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AL512356.2-201ENST00000546955 174 ntBASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC093520.2-201ENST00000561830 333 ntBASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 INTS4P1-203ENST00000641008 3683 ntBASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 COL6A4P2-202ENST00000504443 2753 ntBASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
DEPDC4Q8N2C3 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AC098859.1-201ENST00000502915 1238 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AC069262.1-201ENST00000539058 672 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 LINC01225-203ENST00000563550 1244 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AC061975.2-201ENST00000581722 295 ntBASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
DEPDC4Q8N2C3 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
DEPDC4Q8N2C3 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 178.7 ms