Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LYSMD4Q5XG99 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AC020910.5-201ENST00000623668 1865 ntBASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AC009884.2-201ENST00000603110 324 ntBASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AL805961.1-201ENST00000642026 753 ntBASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 NKILA-202ENST00000614771 2598 ntBASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.8□□□□□ -0.04
LYSMD4Q5XG99 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 AC244394.1-201ENST00000435000 1665 ntBASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 RN7SL818P-201ENST00000485099 259 ntBASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 MBLAC2-202ENST00000514906 1936 ntBASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LYSMD4Q5XG99 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms