Protein–RNA interactions for Protein: P23510

TNFSF4, Tumor necrosis factor ligand superfamily member 4, humanhuman

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF4P23510 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.1□□□□□ -0.31
TNFSF4P23510 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.1□□□□□ -0.31
TNFSF4P23510 KRT18P25-201ENST00000508931 1278 ntBASIC13.1□□□□□ -0.31
TNFSF4P23510 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.1□□□□□ -0.31
TNFSF4P23510 AP001582.1-201ENST00000525856 295 ntBASIC13.1□□□□□ -0.31
TNFSF4P23510 AP001063.1-201ENST00000568332 529 ntBASIC13.1□□□□□ -0.31
TNFSF4P23510 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.1□□□□□ -0.31
TNFSF4P23510 AC015936.2-201ENST00000593177 259 ntBASIC13.1□□□□□ -0.31
TNFSF4P23510 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.1□□□□□ -0.31
TNFSF4P23510 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
TNFSF4P23510 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.1□□□□□ -0.31
TNFSF4P23510 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TNFSF4P23510 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.1□□□□□ -0.31
TNFSF4P23510 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.1□□□□□ -0.31
TNFSF4P23510 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TNFSF4P23510 AC063926.2-201ENST00000623766 1308 ntBASIC13.1□□□□□ -0.31
TNFSF4P23510 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.1□□□□□ -0.31
TNFSF4P23510 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TNFSF4P23510 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TNFSF4P23510 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.09□□□□□ -0.31
TNFSF4P23510 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
TNFSF4P23510 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.09□□□□□ -0.31
TNFSF4P23510 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.09□□□□□ -0.31
TNFSF4P23510 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
TNFSF4P23510 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
TNFSF4P23510 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 AC005034.1-201ENST00000426657 489 ntBASIC13.09□□□□□ -0.31
TNFSF4P23510 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.09□□□□□ -0.31
TNFSF4P23510 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 PTP4A1P2-201ENST00000546033 454 ntBASIC13.09□□□□□ -0.31
TNFSF4P23510 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.09□□□□□ -0.31
TNFSF4P23510 SAMD11P1-201ENST00000571429 661 ntBASIC13.09□□□□□ -0.31
TNFSF4P23510 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.09□□□□□ -0.31
TNFSF4P23510 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 AC105917.1-201ENST00000506637 2539 ntBASIC13.09□□□□□ -0.31
TNFSF4P23510 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
TNFSF4P23510 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.09□□□□□ -0.31
TNFSF4P23510 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.09□□□□□ -0.31
TNFSF4P23510 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TNFSF4P23510 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
TNFSF4P23510 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
TNFSF4P23510 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.08□□□□□ -0.31
TNFSF4P23510 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
TNFSF4P23510 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.08□□□□□ -0.32
TNFSF4P23510 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
TNFSF4P23510 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
TNFSF4P23510 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 SSR4P1-203ENST00000599569 2260 ntBASIC13.08□□□□□ -0.32
TNFSF4P23510 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.08□□□□□ -0.32
TNFSF4P23510 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
TNFSF4P23510 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.08□□□□□ -0.32
TNFSF4P23510 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.08□□□□□ -0.32
TNFSF4P23510 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.08□□□□□ -0.32
TNFSF4P23510 TTTY23B-201ENST00000442790 549 ntBASIC13.08□□□□□ -0.32
TNFSF4P23510 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms