Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DDR1-232ENST00000418800 3588 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.534e-7■□□□□ 9.7
YBX3P16989 DDR1-240ENST00000454612 3942 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.544e-7■□□□□ 9.7
YBX3P16989 DDR1-239ENST00000452441 3857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.564e-7■□□□□ 9.7
YBX3P16989 SAE1-211ENST00000600753 483 ntTSL 429.37■■■□□ 2.294e-7■□□□□ 9.7
YBX3P16989 SAE1-208ENST00000597808 570 ntTSL 223.13■■□□□ 1.294e-7■□□□□ 9.7
YBX3P16989 SAE1-205ENST00000594144 723 ntTSL 321.5■■□□□ 1.034e-7■□□□□ 9.7
YBX3P16989 SAE1-206ENST00000594526 709 ntTSL 316.46■□□□□ 0.234e-7■□□□□ 9.7
YBX3P16989 SAE1-210ENST00000600706 744 ntTSL 512.67□□□□□ -0.384e-7■□□□□ 9.7
YBX3P16989 COPG1-207ENST00000513410 545 ntTSL 216.21■□□□□ 0.192e-8■□□□□ 9.7
YBX3P16989 NUP98-211ENST00000483285 545 ntTSL 215.07■□□□□ 04e-6■□□□□ 9.7
YBX3P16989 NUP98-215ENST00000529063 544 ntTSL 38.5□□□□□ -1.054e-6■□□□□ 9.7
YBX3P16989 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.071e-8■□□□□ 9.7
YBX3P16989 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.461e-8■□□□□ 9.7
YBX3P16989 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.173e-7■□□□□ 9.7
YBX3P16989 SLC25A6-202ENST00000475167 900 ntTSL 220.61■□□□□ 0.893e-14■□□□□ 9.7
YBX3P16989 SLC25A6-203ENST00000484026 854 ntTSL 517.4■□□□□ 0.383e-14■□□□□ 9.7
YBX3P16989 GATAD2A-209ENST00000448576 271 ntTSL 338.48■■■■□ 3.754e-6■□□□□ 9.7
YBX3P16989 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.521e-7■□□□□ 9.7
YBX3P16989 GATAD2A-210ENST00000457895 729 ntTSL 229.09■■■□□ 2.254e-6■□□□□ 9.7
YBX3P16989 GATAD2A-212ENST00000494516 640 ntTSL 227■■□□□ 1.914e-6■□□□□ 9.7
YBX3P16989 GATAD2A-204ENST00000417582 655 ntTSL 226.3■■□□□ 1.84e-6■□□□□ 9.7
YBX3P16989 NPLOC4-217ENST00000574897 2365 ntTSL 225.49■■□□□ 1.671e-7■□□□□ 9.7
YBX3P16989 DPH1-207ENST00000571710 2013 ntTSL 1 (best)25.44■■□□□ 1.661e-7■□□□□ 9.7
YBX3P16989 PP7080-204ENST00000510714 601 ntTSL 3 BASIC25.21■■□□□ 1.631e-7■□□□□ 9.7
YBX3P16989 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC23.53■■□□□ 1.361e-7■□□□□ 9.7
YBX3P16989 ERF-206ENST00000596818 566 ntTSL 322.97■■□□□ 1.271e-7■□□□□ 9.7
YBX3P16989 CISD3-206ENST00000619858 2326 ntTSL 1 (best)21.92■■□□□ 1.11e-7■□□□□ 9.7
YBX3P16989 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.081e-7■□□□□ 9.7
YBX3P16989 DPH1-217ENST00000607788 775 ntTSL 521.71■■□□□ 1.071e-7■□□□□ 9.7
YBX3P16989 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.061e-7■□□□□ 9.7
YBX3P16989 DPH1-205ENST00000570867 2265 ntTSL 221.55■■□□□ 1.041e-7■□□□□ 9.7
YBX3P16989 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.52■■□□□ 1.041e-7■□□□□ 9.7
YBX3P16989 DPH1-210ENST00000572684 2607 ntTSL 219.39■□□□□ 0.71e-7■□□□□ 9.7
YBX3P16989 CISD3-205ENST00000616128 773 ntTSL 219.31■□□□□ 0.681e-7■□□□□ 9.7
YBX3P16989 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.431e-7■□□□□ 9.7
YBX3P16989 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.49■□□□□ 0.234e-8■□□□□ 9.7
YBX3P16989 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.074e-8■□□□□ 9.7
YBX3P16989 SLC43A3-218ENST00000530232 389 ntTSL 314.43□□□□□ -0.15e-11■□□□□ 9.7
YBX3P16989 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.234e-8■□□□□ 9.7
YBX3P16989 ESYT1-208ENST00000550986 543 ntTSL 412.5□□□□□ -0.411e-7■□□□□ 9.7
YBX3P16989 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC12.36□□□□□ -0.431e-7■□□□□ 9.7
YBX3P16989 NPLOC4-208ENST00000572351 460 ntTSL 511.66□□□□□ -0.541e-7■□□□□ 9.7
YBX3P16989 CCNY-204ENST00000374706 3940 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.64e-8■□□□□ 9.7
YBX3P16989 OXCT1-201ENST00000196371 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.651e-6■□□□□ 9.7
YBX3P16989 CBFB-207ENST00000566281 484 ntTSL 29.92□□□□□ -0.821e-7■□□□□ 9.7
YBX3P16989 CBFB-209ENST00000568858 914 ntTSL 39.75□□□□□ -0.851e-7■□□□□ 9.7
YBX3P16989 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC9.12□□□□□ -0.951e-6■□□□□ 9.7
YBX3P16989 XPO5-207ENST00000455854 3629 ntTSL 28.81□□□□□ -12e-6■□□□□ 9.7
YBX3P16989 OXCT1-208ENST00000514723 241 ntTSL 58.78□□□□□ -11e-6■□□□□ 9.7
YBX3P16989 USP32-206ENST00000587651 645 ntTSL 36.79□□□□□ -1.321e-7■□□□□ 9.7
YBX3P16989 USP32-213ENST00000591768 739 ntTSL 36.46□□□□□ -1.381e-7■□□□□ 9.7
YBX3P16989 HUWE1-210ENST00000474971 598 ntTSL 26.19□□□□□ -1.421e-7■□□□□ 9.7
YBX3P16989 CMPK1-202ENST00000371871 1212 ntTSL 230.8■■■□□ 2.522e-7■□□□□ 9.7
YBX3P16989 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.53■□□□□ 0.42e-7■□□□□ 9.7
YBX3P16989 CAPRIN1-205ENST00000528856 595 ntTSL 530.23■■■□□ 2.432e-7■□□□□ 9.7
YBX3P16989 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.592e-7■□□□□ 9.7
YBX3P16989 CAPRIN1-202ENST00000389645 3498 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.32e-7■□□□□ 9.7
YBX3P16989 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.062e-7■□□□□ 9.7
YBX3P16989 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.656e-8■□□□□ 9.7
YBX3P16989 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.486e-8■□□□□ 9.7
YBX3P16989 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.946e-8■□□□□ 9.7
YBX3P16989 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.296e-8■□□□□ 9.7
YBX3P16989 UBE2E3-203ENST00000602291 766 ntTSL 312.62□□□□□ -0.396e-8■□□□□ 9.7
YBX3P16989 UBE2E3-210ENST00000602762 340 ntTSL 310.45□□□□□ -0.746e-8■□□□□ 9.7
YBX3P16989 UBE2E3-211ENST00000602837 814 ntTSL 39.08□□□□□ -0.966e-8■□□□□ 9.7
YBX3P16989 UBE2E3-212ENST00000602888 499 ntTSL 26.81□□□□□ -1.326e-8■□□□□ 9.7
YBX3P16989 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.782e-13■□□□□ 9.7
YBX3P16989 MRPS21-202ENST00000614145 1226 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.352e-13■□□□□ 9.7
YBX3P16989 Y_RNA.33-201ENST00000362591 102 ntBASIC4.12□□□□□ -1.751e-323■□□□□ 9.7
YBX3P16989 TMED10-204ENST00000555873 1161 ntTSL 1 (best)16.95■□□□□ 0.36e-10■□□□□ 9.7
YBX3P16989 TMED10-206ENST00000557670 917 ntTSL 212.17□□□□□ -0.463e-10■□□□□ 9.7
YBX3P16989 TMED10-202ENST00000555036 888 ntTSL 1 (best)8.84□□□□□ -0.993e-10■□□□□ 9.7
YBX3P16989 TMED10-205ENST00000556969 1314 ntTSL 26.55□□□□□ -1.363e-10■□□□□ 9.7
YBX3P16989 GMPS-201ENST00000295920 2024 ntTSL 2 BASIC15.58■□□□□ 0.082e-15■□□□□ 9.7
YBX3P16989 GMPS-203ENST00000496455 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.432e-15■□□□□ 9.7
YBX3P16989 RPL18-207ENST00000549533 666 ntTSL 223.56■■□□□ 1.362e-63■□□□□ 9.7
YBX3P16989 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.62■■□□□ 1.696e-8■□□□□ 9.7
YBX3P16989 PRMT5-214ENST00000553915 1931 ntTSL 216.74■□□□□ 0.276e-8■□□□□ 9.7
YBX3P16989 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.162e-6■□□□□ 9.7
YBX3P16989 TOP2B-203ENST00000424225 3525 ntTSL 1 (best)13.09□□□□□ -0.311e-6■□□□□ 9.7
YBX3P16989 CREG1-202ENST00000466652 794 ntTSL 310.2□□□□□ -0.786e-9■□□□□ 9.7
YBX3P16989 LIMS1-208ENST00000428064 637 ntTSL 228.5■■■□□ 2.152e-9■□□□□ 9.7
YBX3P16989 LIMS1-207ENST00000422797 1544 ntTSL 1 (best)11.21□□□□□ -0.612e-9■□□□□ 9.7
YBX3P16989 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC23.17■■□□□ 1.33e-8■□□□□ 9.7
YBX3P16989 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC36.67■■■■□ 3.467e-7■□□□□ 9.7
YBX3P16989 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC35.84■■■■□ 3.337e-7■□□□□ 9.7
YBX3P16989 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC33.97■■■■□ 3.037e-7■□□□□ 9.7
YBX3P16989 ECI1-206ENST00000566379 961 ntTSL 229.03■■■□□ 2.247e-7■□□□□ 9.7
YBX3P16989 DYNC1H1-206ENST00000555204 353 ntTSL 310.86□□□□□ -0.671e-8■□□□□ 9.7
YBX3P16989 EEF1D-217ENST00000526786 1246 ntTSL 230.01■■■□□ 2.391e-9■□□□□ 9.7
YBX3P16989 EEF1D-212ENST00000525695 907 ntTSL 529.45■■■□□ 2.312e-9■□□□□ 9.7
YBX3P16989 EEF1D-235ENST00000530848 688 ntTSL 325.84■■□□□ 1.731e-9■□□□□ 9.7
YBX3P16989 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC24.97■■□□□ 1.598e-10■□□□□ 9.7
YBX3P16989 EEF1D-221ENST00000528382 308 ntTSL 523.42■■□□□ 1.341e-9■□□□□ 9.7
YBX3P16989 EEF1D-249ENST00000533749 633 ntTSL 522.88■■□□□ 1.252e-9■□□□□ 9.7
YBX3P16989 EEF1D-206ENST00000524397 957 ntTSL 322.73■■□□□ 1.231e-9■□□□□ 9.7
YBX3P16989 EEF1D-230ENST00000530191 853 ntTSL 320.15■□□□□ 0.821e-9■□□□□ 9.7
YBX3P16989 EEF1D-232ENST00000530445 1217 ntTSL 219.91■□□□□ 0.781e-9■□□□□ 9.7
YBX3P16989 EEF1D-252ENST00000534377 617 ntTSL 219.63■□□□□ 0.731e-9■□□□□ 9.7
YBX3P16989 EEF1D-251ENST00000534232 817 ntTSL 519.39■□□□□ 0.691e-9■□□□□ 9.7
Retrieved 100 of 29,075 protein–RNA pairs in 172 ms