Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A1P02462 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
COL4A1P02462 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL4A1P02462 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL4A1P02462 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A1P02462 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A1P02462 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A1P02462 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL4A1P02462 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A1P02462 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A1P02462 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A1P02462 AC006335.1-201ENST00000445200 547 ntBASIC18.18■□□□□ 0.5
COL4A1P02462 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL4A1P02462 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A1P02462 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
COL4A1P02462 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A1P02462 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A1P02462 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 LINC01101-201ENST00000622953 1884 ntBASIC18.18■□□□□ 0.5
COL4A1P02462 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
COL4A1P02462 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
COL4A1P02462 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 AL627389.1-201ENST00000413508 1182 ntBASIC18.18■□□□□ 0.5
COL4A1P02462 AC104784.1-201ENST00000473096 294 ntBASIC18.18■□□□□ 0.5
COL4A1P02462 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A1P02462 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A1P02462 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL4A1P02462 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A1P02462 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A1P02462 AC133540.1-201ENST00000620845 1019 ntBASIC18.18■□□□□ 0.5
COL4A1P02462 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.18■□□□□ 0.5
COL4A1P02462 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.17■□□□□ 0.5
COL4A1P02462 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 XBP1P1-201ENST00000436573 652 ntBASIC18.17■□□□□ 0.5
COL4A1P02462 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 MIR6842-201ENST00000612539 65 ntBASIC18.17■□□□□ 0.5
COL4A1P02462 AL805961.1-201ENST00000642026 753 ntBASIC18.17■□□□□ 0.5
COL4A1P02462 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A1P02462 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A1P02462 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A1P02462 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL4A1P02462 AL109954.1-202ENST00000564051 2148 ntBASIC18.16■□□□□ 0.5
COL4A1P02462 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
COL4A1P02462 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A1P02462 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL4A1P02462 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 MAGEA5-201ENST00000446757 942 ntBASIC18.16■□□□□ 0.5
COL4A1P02462 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A1P02462 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A1P02462 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
COL4A1P02462 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A1P02462 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A1P02462 AC027601.3-201ENST00000622907 509 ntBASIC18.16■□□□□ 0.5
COL4A1P02462 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A1P02462 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms