Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.28■□□□□ 0.04
SHOX2O60902 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHOX2O60902 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.27■□□□□ 0.04
SHOX2O60902 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.27■□□□□ 0.04
SHOX2O60902 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SHOX2O60902 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.27■□□□□ 0.04
SHOX2O60902 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 PCDHB18P-202ENST00000526308 3197 ntBASIC15.27■□□□□ 0.04
SHOX2O60902 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.27■□□□□ 0.04
SHOX2O60902 AC072061.1-201ENST00000569710 2234 ntBASIC15.27■□□□□ 0.04
SHOX2O60902 KHSRPP1-201ENST00000427983 1768 ntBASIC15.27■□□□□ 0.04
SHOX2O60902 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.27■□□□□ 0.04
SHOX2O60902 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SHOX2O60902 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.27■□□□□ 0.04
SHOX2O60902 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.27■□□□□ 0.04
SHOX2O60902 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC15.27■□□□□ 0.04
SHOX2O60902 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SHOX2O60902 AC098859.1-201ENST00000502915 1238 ntBASIC15.27■□□□□ 0.04
SHOX2O60902 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.27■□□□□ 0.04
SHOX2O60902 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.27■□□□□ 0.04
SHOX2O60902 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.27■□□□□ 0.04
SHOX2O60902 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.27■□□□□ 0.04
SHOX2O60902 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.27■□□□□ 0.04
SHOX2O60902 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.27■□□□□ 0.04
SHOX2O60902 AC107918.4-202ENST00000641623 219 ntBASIC15.27■□□□□ 0.04
SHOX2O60902 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC15.27■□□□□ 0.03
SHOX2O60902 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHOX2O60902 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SHOX2O60902 AC090643.2-201ENST00000623442 2029 ntBASIC15.27■□□□□ 0.03
SHOX2O60902 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHOX2O60902 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.27■□□□□ 0.03
SHOX2O60902 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHOX2O60902 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.27■□□□□ 0.03
SHOX2O60902 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SHOX2O60902 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SHOX2O60902 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SHOX2O60902 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.27■□□□□ 0.03
SHOX2O60902 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 MRPL20P1-201ENST00000400819 433 ntBASIC15.26■□□□□ 0.03
SHOX2O60902 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.26■□□□□ 0.03
SHOX2O60902 SAPCD2P3-201ENST00000455031 850 ntBASIC15.26■□□□□ 0.03
SHOX2O60902 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.26■□□□□ 0.03
SHOX2O60902 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.26■□□□□ 0.03
SHOX2O60902 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.26■□□□□ 0.03
SHOX2O60902 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHOX2O60902 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms