Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
SMKR1H3BMG3 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.22□□□□□ -0.61
SMKR1H3BMG3 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC098859.1-201ENST00000502915 1238 ntBASIC11.22□□□□□ -0.61
SMKR1H3BMG3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CYP4F24P-201ENST00000586049 1580 ntBASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC015802.1-201ENST00000588104 1449 ntBASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 SPTSSB-204ENST00000617024 1292 ntBASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC010507.1-201ENST00000633895 436 ntBASIC11.22□□□□□ -0.61
SMKR1H3BMG3 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC11.22□□□□□ -0.61
SMKR1H3BMG3 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 TSPY19P-201ENST00000418461 509 ntBASIC11.21□□□□□ -0.61
SMKR1H3BMG3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC11.21□□□□□ -0.61
SMKR1H3BMG3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 HNRNPDP1-201ENST00000439535 754 ntBASIC11.21□□□□□ -0.61
SMKR1H3BMG3 TSPY18P-201ENST00000441642 509 ntBASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 NMU-203ENST00000507338 658 ntTSL 3 BASIC11.21□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms