Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 NUS1P3-201ENST00000423502 862 ntBASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 HLA-K-203ENST00000430151 1046 ntBASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 TP53TG3HP-202ENST00000569755 579 ntBASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
AP4E1Q9UPM8 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 CICP23-201ENST00000605013 2741 ntBASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 CRB3P1-201ENST00000449338 276 ntBASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 WFDC1-204ENST00000613603 549 ntBASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
AP4E1Q9UPM8 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.83■□□□□ 0.13
AP4E1Q9UPM8 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 RNU1-114P-201ENST00000365297 166 ntBASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
AP4E1Q9UPM8 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
AP4E1Q9UPM8 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
AP4E1Q9UPM8 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms